Detailed information    

insolico Bioinformatically predicted

Overview

Name   ceuB   Type   Machinery gene
Locus tag   OT343_RS06955 Genome accession   NZ_CP116955
Coordinates   1343846..1344814 (+) Length   322 a.a.
NCBI ID   WP_002874446.1    Uniprot ID   A0AB36G4C9
Organism   Campylobacter sp. CFSAN122719     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1338846..1349814
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OT343_RS06930 (OT343_06925) - 1339756..1340481 (-) 726 WP_406606530.1 phosphatidate cytidylyltransferase -
  OT343_RS06935 (OT343_06930) - 1340490..1340828 (-) 339 WP_002852397.1 hypothetical protein -
  OT343_RS06940 (OT343_06935) - 1340830..1342137 (-) 1308 WP_002875975.1 NFACT family protein -
  OT343_RS06945 (OT343_06940) - 1342199..1342774 (+) 576 WP_002867312.1 molybdenum cofactor guanylyltransferase -
  OT343_RS06950 (OT343_06945) - 1342771..1343760 (+) 990 WP_002860788.1 phospholipase A -
  OT343_RS06955 (OT343_06950) ceuB 1343846..1344814 (+) 969 WP_002874446.1 ABC transporter permease Machinery gene
  OT343_RS06960 (OT343_06955) - 1344807..1345745 (+) 939 WP_406606531.1 iron chelate uptake ABC transporter family permease subunit -
  OT343_RS06965 (OT343_06960) - 1345742..1346497 (+) 756 WP_002867308.1 ABC transporter ATP-binding protein -
  OT343_RS06970 (OT343_06965) ceuB 1346510..1347502 (+) 993 WP_002867307.1 enterochelin ABC transporter substrate-binding protein CeuB -
  OT343_RS06980 (OT343_06975) - 1347728..1348282 (-) 555 WP_002867306.1 membrane protein -

Sequence

Protein


Download         Length: 322 a.a.        Molecular weight: 35455.37 Da        Isoelectric Point: 9.6678

>NTDB_id=781594 OT343_RS06955 WP_002874446.1 1343846..1344814(+) (ceuB) [Campylobacter sp. CFSAN122719]
MFFKHILSLKVLIALLLFFGMISLFIGVISINVKDILNLNSTQLEIITLTRIPRLIAILLTGMSLSICGLIMQQLTQNKF
VSPTTAGTMDCAKFGILISLIFFAGASFFTQTIIASVFALLGSFIFIQILRKIKLKDVIFVPLIGLMFGGIISAITTFFA
YALNYIQNIQGWLQGSMANVMQGNYELLYISLPLFILAYFLAHKITIVGMGEDIALNLGISYNGILFLGLMIVSIITSLV
IVSVGIIPFLGLIIPNLVALYLGDNLRKNLIYIALCGALFLLVCDIISRLVIFPFEMPLSITTGVLGSLIFIFLLLKRKV
YA

Nucleotide


Download         Length: 969 bp        

>NTDB_id=781594 OT343_RS06955 WP_002874446.1 1343846..1344814(+) (ceuB) [Campylobacter sp. CFSAN122719]
TTGTTTTTTAAGCATATATTGAGTTTAAAAGTGCTTATAGCTTTACTTTTATTCTTTGGAATGATAAGTTTATTTATAGG
AGTTATCAGTATCAATGTAAAAGATATTCTTAATCTTAACTCCACTCAACTAGAAATCATAACTCTCACAAGAATTCCTA
GACTTATAGCAATTTTACTCACAGGAATGAGTCTTAGTATATGCGGGCTTATCATGCAACAACTCACGCAAAATAAATTC
GTTTCCCCAACTACAGCAGGGACTATGGATTGTGCTAAATTTGGCATACTTATTTCTTTAATATTTTTTGCTGGAGCGTC
TTTTTTTACTCAAACTATCATTGCTTCTGTATTTGCACTTTTGGGTTCTTTTATATTTATCCAAATTTTAAGAAAAATCA
AACTCAAAGATGTGATTTTTGTACCTTTGATAGGCTTGATGTTTGGAGGTATTATTAGTGCTATAACCACTTTTTTTGCC
TATGCTTTAAATTATATACAAAATATCCAAGGTTGGCTACAAGGCAGTATGGCAAATGTTATGCAGGGAAATTATGAATT
GCTCTACATTTCTTTACCACTTTTTATACTTGCTTATTTTTTAGCTCATAAAATTACCATAGTTGGCATGGGTGAAGATA
TAGCTTTAAATCTTGGAATTTCTTATAATGGGATATTATTTTTAGGCTTGATGATTGTAAGCATTATCACTAGTTTAGTG
ATTGTAAGCGTTGGGATTATCCCTTTTTTAGGGCTAATTATCCCAAATTTAGTAGCTCTTTATCTAGGTGATAATCTTAG
AAAAAATCTTATCTATATAGCACTTTGTGGAGCTTTGTTTTTGCTTGTTTGCGATATCATTTCAAGACTTGTCATCTTTC
CTTTTGAAATGCCTTTAAGCATCACTACAGGTGTTTTAGGATCTTTAATCTTTATCTTTCTTTTGCTAAAAAGGAAAGTT
TATGCGTAA

Domains

Predicted by InterproScan.

FecCD transport family (FecCD)

(15-317)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ceuB Campylobacter jejuni subsp. jejuni 81-176

99.379

100

0.994