Detailed information NTG0781589

Bioinformatically predicted

Overview

• Name: waaF
• Type: Regulator
• Locus tag: OT343_RS05960
• Genome accession: NZ_CP116955
• Coordinates: 1142126..1143085 (+)
• Length: 319 a.a.
• NCBI ID: WP_002876195.1
• Uniprot ID: -
• Organism: Campylobacter sp. CFSAN122719
• Function: repress natural transformation (predicted from homology) Competence regulation

Genomic Context

Location: 1137126..1148085

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
OT343_RS05935 (OT343_05930)	-	1137475..1138497 (-)	1023	WP_002876190.1	hypothetical protein	-
OT343_RS05940 (OT343_05935)	-	1138568..1139341 (+)	774	WP_002866160.1	glycosyltransferase family 25 protein	-
OT343_RS05945 (OT343_05940)	wlaTB	1139334..1140290 (+)	957	WP_002860237.1	class E lipooligosaccharide biosynthesis protein WlaTB	-
OT343_RS05950 (OT343_05945)	wlaTC	1140287..1141246 (+)	960	WP_002876191.1	class E lipooligosaccharide biosynthesis protein WlaTC	-
OT343_RS05955 (OT343_05950)	-	1141249..1142067 (-)	819	WP_002876193.1	glycosyltransferase family 2 protein	-
OT343_RS05960 (OT343_05955)	waaF	1142126..1143085 (+)	960	WP_002876195.1	lipopolysaccharide heptosyltransferase II	Regulator
OT343_RS05965 (OT343_05960)	gmhA	1143066..1143626 (-)	561	WP_002876196.1	D-sedoheptulose 7-phosphate isomerase	-
OT343_RS05970 (OT343_05965)	rfaE1	1143623..1145008 (-)	1386	WP_002910336.1	D-glycero-beta-D-manno-heptose-7-phosphate kinase	-
OT343_RS05975 (OT343_05970)	rfaD	1145001..1145954 (-)	954	WP_002886910.1	ADP-glyceromanno-heptose 6-epimerase	-
OT343_RS05980 (OT343_05975)	gmhB	1145955..1146516 (-)	562	Protein_1158	D-glycero-alpha-D-manno-heptose-1,7-bisphosphate 7-phosphatase	-
OT343_RS05985 (OT343_05980)	-	1146597..1146899 (+)	303	WP_002852762.1	cytochrome c	-
OT343_RS05990 (OT343_05985)	ccoS	1146922..1147128 (-)	207	WP_002852798.1	cbb3-type cytochrome oxidase assembly protein CcoS	-

Sequence

Protein

• Length: 319 a.a.
• Molecular weight: 36607.08 Da
• Isoelectric Point: 10.2870

>NTDB_id=781589 OT343_RS05960 WP_002876195.1 1142126..1143085(+) (waaF) [Campylobacter sp. CFSAN122719]
MKIFIHLPTWLGDAVMASPALYAIKEHFKNAQFILYGSLVSTALFKEFPNSKIIIENKQSRYKQALSLRKELGKIDLSFA
FRSAFSSKIILHILKTKQRYFFDKNKHKEEHQVLKYLYFIENSLSIKAHSKDLKLPFKLKLQDPLVLKNGKKILGLNPGA
SFGSAKRWDASYFAKVALNFSQSHEILIFGAGKSEQELCNEIYQILKEQNIKVKNLCNKTTIKTLCQNIAFCDLFITNDS
GPMHISAVYKVKTVAIFGPTKFTQTSPWQNENAILVHLDLACMPCMQKTCPLKHHKCMKDLKPQRVIEEARNLLKNSHR

Nucleotide

• Length: 960 bp

>NTDB_id=781589 OT343_RS05960 WP_002876195.1 1142126..1143085(+) (waaF) [Campylobacter sp. CFSAN122719]
ATGAAAATTTTTATACATCTTCCCACTTGGCTGGGCGATGCAGTGATGGCTTCACCTGCTTTATACGCTATAAAAGAACA
TTTTAAAAATGCCCAATTTATCCTTTATGGCTCTTTAGTTTCCACAGCACTTTTTAAAGAATTTCCTAATTCTAAAATCA
TCATAGAAAATAAACAATCTCGCTATAAACAAGCCCTATCTTTACGCAAAGAACTTGGTAAGATCGATCTTAGCTTTGCT
TTTAGATCTGCGTTTTCTTCTAAGATTATCTTGCATATCCTTAAAACAAAACAAAGATATTTTTTTGACAAAAACAAGCA
CAAAGAAGAACATCAAGTTTTAAAATACCTTTATTTTATAGAAAACTCACTTAGTATAAAAGCTCATTCTAAAGACTTAA
AGCTTCCCTTTAAGCTAAAACTTCAAGACCCTCTTGTCTTAAAAAATGGTAAAAAAATTCTAGGACTCAATCCTGGCGCA
AGCTTTGGAAGTGCAAAAAGATGGGATGCGAGTTATTTTGCTAAAGTGGCTTTAAATTTCAGCCAAAGTCATGAAATTTT
AATCTTTGGCGCAGGAAAATCCGAACAAGAACTTTGTAATGAAATTTATCAAATTTTAAAAGAACAAAACATAAAAGTAA
AAAATCTTTGCAACAAAACCACCATCAAAACCCTTTGTCAAAATATCGCTTTTTGCGATCTTTTCATCACAAATGACAGT
GGTCCTATGCACATAAGTGCGGTTTATAAGGTAAAAACCGTAGCTATTTTTGGCCCTACGAAATTTACTCAAACTTCACC
TTGGCAAAATGAAAACGCAATATTAGTGCATTTAGATCTAGCTTGTATGCCTTGTATGCAAAAAACCTGCCCTTTAAAAC
ACCACAAATGCATGAAAGATCTAAAGCCTCAAAGGGTTATAGAAGAGGCTAGAAATTTACTTAAAAACTCTCATCGATGA

Domains

Predicted by InterproScan.

• Glycosyltransferase family 9 (heptosyltransferase) (Glyco_transf_9) (94-294)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
waaF	Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819	94.025	99.687	0.937