Detailed information    

insolico Bioinformatically predicted

Overview

Name   rpoN/rpoN1   Type   Machinery gene
Locus tag   QZL43_RS14510 Genome accession   NZ_CP129938
Coordinates   3107171..3108637 (+) Length   488 a.a.
NCBI ID   WP_042771003.1    Uniprot ID   -
Organism   Vibrio parahaemolyticus strain BM21A     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3102171..3113637
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QZL43_RS14485 - 3103291..3104256 (+) 966 WP_005455122.1 calcium/sodium antiporter -
  QZL43_RS14490 kdsD 3104293..3105264 (+) 972 WP_020841311.1 arabinose-5-phosphate isomerase KdsD -
  QZL43_RS14495 lptC 3105355..3105918 (+) 564 WP_005467805.1 LPS export ABC transporter periplasmic protein LptC -
  QZL43_RS14500 lptA 3105899..3106393 (+) 495 WP_005467803.1 lipopolysaccharide transport periplasmic protein LptA -
  QZL43_RS14505 lptB 3106395..3107120 (+) 726 WP_005467801.1 LPS export ABC transporter ATP-binding protein -
  QZL43_RS14510 rpoN/rpoN1 3107171..3108637 (+) 1467 WP_042771003.1 RNA polymerase factor sigma-54 Machinery gene
  QZL43_RS14515 hpf 3108662..3108949 (+) 288 WP_005467451.1 ribosome hibernation promoting factor -
  QZL43_RS14520 ptsN 3108952..3109398 (+) 447 WP_005467453.1 PTS IIA-like nitrogen regulatory protein PtsN -
  QZL43_RS14525 rapZ 3109413..3110276 (+) 864 WP_005468663.1 RNase adapter RapZ -
  QZL43_RS14530 - 3110279..3110554 (+) 276 WP_005468661.1 HPr family phosphocarrier protein -
  QZL43_RS14535 mgtE 3110774..3112129 (+) 1356 WP_005468659.1 magnesium transporter -
  QZL43_RS14540 pmbA 3112206..3113549 (-) 1344 WP_140284592.1 metalloprotease PmbA -

Sequence

Protein


Download         Length: 488 a.a.        Molecular weight: 54781.61 Da        Isoelectric Point: 4.3378

>NTDB_id=781585 QZL43_RS14510 WP_042771003.1 3107171..3108637(+) (rpoN/rpoN1) [Vibrio parahaemolyticus strain BM21A]
MKPSLQLKLGQQLAMTPQLQQAIRLLQLSTLDLQQEIQEALDSNPLLEVEEGHEEPQANGEDKSALETADNSANEPTEIE
VPDSSDVIEKSEISSELEIDTTWDDVYSANTGSTGLALDDDMPVYQGETTESLHDYLMWQLDLTPFSETDRTIAIAIIDA
IDDYGYLTLSPEEIHESFNNEDIELDEVEAVRKRIQQFDPLGVASQNLQECLLLQLATFPEDTPWLAEAKMILADHIDHL
GNRDYKLVIKETKLKEADLREVLKLIQQLDPRPGSRITPDDTEYVIPDVSVFKDHGKWTVSINPDSIPKLKVNQQYAQLG
KGNSADSQYIRSNLQEAKWLIKSLESRNETLLKVAKCIVEHQQDFFEYGEEAMKPMVLNDVALAVDMHESTISRVTTQKF
MHTPRGIFELKYFFSSHVSTDNGGECSSTAIRALIKKLVAAENTAKPLSDSKIAALLADQGIQVARRTIAKYRESLGIAP
SSQRKRLL

Nucleotide


Download         Length: 1467 bp        

>NTDB_id=781585 QZL43_RS14510 WP_042771003.1 3107171..3108637(+) (rpoN/rpoN1) [Vibrio parahaemolyticus strain BM21A]
ATGAAACCTTCATTACAACTCAAGCTAGGTCAACAGTTAGCCATGACGCCACAGTTGCAACAAGCGATTCGCTTGCTGCA
GTTGTCGACTCTCGATCTTCAACAAGAAATCCAAGAAGCGTTGGACTCAAACCCACTATTGGAAGTTGAAGAAGGCCACG
AAGAACCTCAAGCAAATGGTGAAGACAAATCAGCACTCGAAACTGCTGACAACAGTGCCAACGAGCCAACAGAAATCGAA
GTTCCTGATAGTTCTGACGTCATCGAAAAGTCCGAAATCAGCTCAGAGCTTGAAATCGACACAACTTGGGATGATGTCTA
CAGCGCAAATACGGGCAGTACCGGTTTAGCGTTAGACGATGATATGCCGGTCTACCAAGGCGAAACCACAGAATCGCTAC
ACGATTACTTAATGTGGCAACTCGACTTAACGCCTTTCAGTGAGACCGACCGTACGATTGCCATTGCCATCATTGATGCG
ATTGACGATTACGGCTACCTGACCCTATCTCCTGAAGAAATTCACGAAAGCTTCAACAACGAAGATATTGAGTTGGATGA
AGTCGAAGCCGTGCGCAAACGCATCCAACAGTTTGACCCGCTTGGTGTGGCATCGCAGAACCTGCAAGAATGCTTACTCC
TGCAACTTGCAACCTTCCCAGAAGACACGCCTTGGCTTGCGGAAGCCAAAATGATTCTTGCCGATCACATCGATCACCTT
GGTAATCGCGATTACAAACTGGTCATCAAAGAAACTAAGCTAAAAGAAGCGGATCTACGCGAAGTATTAAAACTGATCCA
ACAGTTAGATCCTCGTCCGGGCAGCCGCATTACCCCAGACGACACAGAATACGTCATTCCGGACGTATCGGTATTTAAAG
ATCATGGGAAATGGACCGTTTCCATCAACCCTGACAGCATTCCAAAGTTAAAAGTTAACCAACAATACGCTCAATTAGGC
AAAGGCAACAGTGCGGATAGCCAGTACATTCGCAGCAATTTGCAAGAGGCAAAATGGTTAATTAAGAGCTTAGAGAGCAG
AAACGAGACGCTACTCAAAGTTGCAAAATGTATTGTTGAACATCAACAAGATTTCTTCGAGTATGGTGAAGAAGCCATGA
AGCCAATGGTACTCAATGATGTAGCCTTGGCGGTGGACATGCATGAATCCACAATATCTCGTGTTACGACACAAAAGTTC
ATGCATACGCCACGTGGCATTTTTGAATTGAAGTACTTCTTCTCCAGCCACGTCAGTACAGACAATGGCGGAGAATGTTC
GTCAACAGCAATCCGCGCACTCATTAAGAAACTGGTCGCGGCAGAGAATACTGCTAAACCACTTAGTGACAGTAAGATTG
CTGCTCTTCTGGCTGACCAAGGGATTCAGGTCGCAAGACGTACGATAGCTAAATATCGCGAATCCTTGGGTATTGCCCCT
TCAAGTCAGCGTAAACGCCTACTTTAA

Domains

Predicted by InterProScan.

Sigma-54 factor, Activator interacting domain (AID) (Sigma54_AID)

(4-49)

Sigma-54, DNA binding domain (Sigma54_DBD)

(328-486)

Sigma-54 factor, core binding domain (Sigma54_CBD)

(129-316)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rpoN/rpoN1 Ralstonia pseudosolanacearum GMI1000

44.246

100

0.457