Detailed information    

insolico Bioinformatically predicted

Overview

Name   ceuB   Type   Machinery gene
Locus tag   OT390_RS06855 Genome accession   NZ_CP116953
Coordinates   1313554..1314522 (+) Length   322 a.a.
NCBI ID   WP_002874446.1    Uniprot ID   A0AB36G4C9
Organism   Campylobacter sp. CFSAN122748     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1308554..1319522
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OT390_RS06830 (OT390_06815) - 1309465..1310190 (-) 726 WP_002888102.1 phosphatidate cytidylyltransferase -
  OT390_RS06835 (OT390_06820) - 1310199..1310537 (-) 339 WP_002852397.1 hypothetical protein -
  OT390_RS06840 (OT390_06825) - 1310539..1311846 (-) 1308 WP_002888101.1 NFACT family protein -
  OT390_RS06845 (OT390_06830) - 1311908..1312483 (+) 576 WP_002867312.1 molybdenum cofactor guanylyltransferase -
  OT390_RS06850 (OT390_06835) - 1312480..1313468 (+) 989 Protein_1329 phospholipase A -
  OT390_RS06855 (OT390_06840) ceuB 1313554..1314522 (+) 969 WP_002874446.1 ABC transporter permease Machinery gene
  OT390_RS06860 (OT390_06845) - 1314515..1315453 (+) 939 WP_002867309.1 iron chelate uptake ABC transporter family permease subunit -
  OT390_RS06865 (OT390_06850) - 1315450..1316205 (+) 756 WP_002896069.1 ABC transporter ATP-binding protein -
  OT390_RS06870 (OT390_06855) ceuB 1316218..1317210 (+) 993 WP_032586806.1 enterochelin ABC transporter substrate-binding protein CeuB -
  OT390_RS06880 (OT390_06865) - 1317436..1317990 (-) 555 WP_002855904.1 membrane protein -

Sequence

Protein


Download         Length: 322 a.a.        Molecular weight: 35455.37 Da        Isoelectric Point: 9.6678

>NTDB_id=781567 OT390_RS06855 WP_002874446.1 1313554..1314522(+) (ceuB) [Campylobacter sp. CFSAN122748]
MFFKHILSLKVLIALLLFFGMISLFIGVISINVKDILNLNSTQLEIITLTRIPRLIAILLTGMSLSICGLIMQQLTQNKF
VSPTTAGTMDCAKFGILISLIFFAGASFFTQTIIASVFALLGSFIFIQILRKIKLKDVIFVPLIGLMFGGIISAITTFFA
YALNYIQNIQGWLQGSMANVMQGNYELLYISLPLFILAYFLAHKITIVGMGEDIALNLGISYNGILFLGLMIVSIITSLV
IVSVGIIPFLGLIIPNLVALYLGDNLRKNLIYIALCGALFLLVCDIISRLVIFPFEMPLSITTGVLGSLIFIFLLLKRKV
YA

Nucleotide


Download         Length: 969 bp        

>NTDB_id=781567 OT390_RS06855 WP_002874446.1 1313554..1314522(+) (ceuB) [Campylobacter sp. CFSAN122748]
TTGTTTTTTAAGCATATATTGAGTTTAAAAGTGCTTATAGCTTTACTATTATTCTTTGGAATGATAAGTTTATTTATAGG
AGTTATCAGTATCAATGTAAAAGATATTCTTAATCTTAACTCCACTCAACTAGAAATCATAACTCTCACAAGAATTCCTA
GACTTATAGCGATTTTACTCACAGGAATGAGTCTTAGTATATGCGGGCTTATCATGCAACAACTCACGCAAAATAAATTC
GTTTCTCCAACTACAGCAGGAACTATGGATTGTGCTAAATTTGGCATACTTATTTCTTTAATATTTTTTGCTGGAGCGTC
TTTTTTTACTCAAACTATCATTGCTTCTGTATTTGCACTTTTGGGTTCTTTTATATTTATCCAAATTTTAAGAAAAATCA
AACTCAAAGATGTGATTTTTGTACCTTTGATAGGCTTGATGTTTGGAGGCATTATTAGTGCTATAACTACTTTTTTTGCC
TATGCTTTAAATTATATACAAAATATCCAAGGCTGGTTACAAGGCAGTATGGCAAATGTTATGCAAGGAAATTATGAATT
GCTCTACATTTCTTTGCCACTTTTTATACTTGCTTATTTTTTAGCTCACAAAATCACCATAGTTGGCATGGGCGAAGATA
TAGCTTTAAATCTTGGAATTTCTTATAATGGGATATTATTTTTAGGCTTGATGATTGTAAGCATTATCACTAGCTTAGTG
ATTGTAAGCGTTGGAATTATCCCTTTTTTAGGGCTAATTATCCCAAATTTAGTAGCTCTTTATCTAGGTGATAATCTTAG
AAAAAATCTTATCTATATAGCACTTTGTGGAGCTTTGTTTTTACTTGTTTGCGATATCATTTCAAGACTTGTCATCTTTC
CTTTTGAAATGCCTTTAAGTATCACTACAGGTGTTTTAGGATCTTTAATCTTTATCTTTCTTTTGCTAAAAAGGAAAGTT
TATGCGTAA

Domains

Predicted by InterproScan.

FecCD transport family (FecCD)

(15-317)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ceuB Campylobacter jejuni subsp. jejuni 81-176

99.379

100

0.994