Detailed information    

insolico Bioinformatically predicted

Overview

Name   ctsT   Type   Machinery gene
Locus tag   OT390_RS05510 Genome accession   NZ_CP116953
Coordinates   1042621..1042923 (+) Length   100 a.a.
NCBI ID   WP_394535901.1    Uniprot ID   -
Organism   Campylobacter sp. CFSAN122748     
Function   type II secretion system/type IV pilin; DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1037621..1047923
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OT390_RS05485 (OT390_05470) rpsR 1037986..1038246 (+) 261 WP_002853032.1 30S ribosomal protein S18 -
  OT390_RS05490 (OT390_05475) lon 1038306..1040681 (-) 2376 WP_002852988.1 endopeptidase La -
  OT390_RS05495 (OT390_05480) - 1040698..1041345 (-) 648 WP_002852961.1 outer membrane protein assembly factor BamD -
  OT390_RS05500 (OT390_05485) fliW 1041504..1041893 (+) 390 WP_002852982.1 flagellar assembly protein FliW -
  OT390_RS05505 (OT390_05490) proC 1041893..1042624 (+) 732 WP_002859150.1 pyrroline-5-carboxylate reductase Machinery gene
  OT390_RS05510 (OT390_05495) ctsT 1042621..1042923 (+) 303 WP_394535901.1 hypothetical protein Machinery gene
  OT390_RS05515 (OT390_05500) - 1042920..1043582 (+) 663 WP_002859149.1 hypothetical protein -
  OT390_RS05520 (OT390_05505) - 1043579..1044031 (+) 453 WP_002874062.1 hypothetical protein -
  OT390_RS05525 (OT390_05510) - 1044028..1044657 (-) 630 WP_002859147.1 uroporphyrinogen-III synthase -
  OT390_RS05530 (OT390_05515) thiE 1044635..1045267 (-) 633 WP_002852670.1 thiamine phosphate synthase -
  OT390_RS05535 (OT390_05520) thiD 1045257..1046069 (-) 813 WP_002867189.1 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase -
  OT390_RS05540 (OT390_05525) - 1046066..1046752 (-) 687 WP_002852847.1 endonuclease III domain-containing protein -
  OT390_RS05545 (OT390_05530) - 1046749..1047510 (-) 762 WP_002852748.1 ATP-binding protein -

Sequence

Protein


Download         Length: 100 a.a.        Molecular weight: 12185.30 Da        Isoelectric Point: 7.0030

>NTDB_id=781560 OT390_RS05510 WP_394535901.1 1042621..1042923(+) (ctsT) [Campylobacter sp. CFSAN122748]
MKKAFILIESISAITIISLIFIGIFYYYIQLYKHYENLNIFERLYKLQEELYEKPIFKTIILQTSALKPIVLQEQFVNDG
IFQFQKLYFQDQNYSVYFKE

Nucleotide


Download         Length: 303 bp        

>NTDB_id=781560 OT390_RS05510 WP_394535901.1 1042621..1042923(+) (ctsT) [Campylobacter sp. CFSAN122748]
ATGAAAAAGGCTTTCATACTTATAGAAAGCATTAGTGCTATAACGATCATATCTTTAATTTTCATTGGCATTTTTTATTA
CTATATTCAACTTTACAAACACTATGAAAATTTAAATATTTTTGAAAGACTCTATAAACTTCAAGAAGAATTATATGAAA
AGCCTATTTTTAAAACCATCATACTTCAAACTTCAGCCTTAAAACCTATAGTTTTACAAGAACAGTTTGTTAATGACGGT
ATATTTCAATTTCAAAAATTATACTTTCAAGATCAAAATTATAGCGTTTATTTTAAAGAATGA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ctsT Campylobacter jejuni subsp. jejuni 81-176

98

100

0.98