Detailed information    

insolico Bioinformatically predicted

Overview

Name   Cj0683   Type   Machinery gene
Locus tag   OT390_RS03580 Genome accession   NZ_CP116953
Coordinates   670706..671143 (+) Length   145 a.a.
NCBI ID   WP_002852324.1    Uniprot ID   A0AA44HIV8
Organism   Campylobacter sp. CFSAN122748     
Function   initialization of DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 665706..676143
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OT390_RS03545 (OT390_03540) - 666332..667025 (+) 694 Protein_687 hypothetical protein -
  OT390_RS03550 (OT390_03545) - 667040..667351 (+) 312 WP_250531209.1 hypothetical protein -
  OT390_RS03555 (OT390_03550) - 667375..667785 (+) 411 WP_240368079.1 DUF4118 domain-containing protein -
  OT390_RS03560 (OT390_03555) - 667866..668018 (+) 153 WP_224374383.1 hypothetical protein -
  OT390_RS03565 (OT390_03560) uvrB 668120..670093 (-) 1974 WP_394535741.1 excinuclease ABC subunit UvrB -
  OT390_RS03570 (OT390_03565) - 670247..670477 (+) 231 WP_002852327.1 hypothetical protein -
  OT390_RS03575 (OT390_03570) - 670467..670709 (+) 243 WP_002852220.1 hypothetical protein -
  OT390_RS03580 (OT390_03575) Cj0683 670706..671143 (+) 438 WP_002852324.1 prepilin-type N-terminal cleavage/methylation domain-containing protein Machinery gene
  OT390_RS03585 (OT390_03580) - 671125..672978 (+) 1854 WP_074470951.1 primosomal protein N' -
  OT390_RS03590 (OT390_03585) - 672988..674382 (-) 1395 WP_052800289.1 DUF2972 domain-containing protein -
  OT390_RS03595 (OT390_03590) ispG 674528..675601 (+) 1074 WP_002854766.1 flavodoxin-dependent (E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase -

Sequence

Protein


Download         Length: 145 a.a.        Molecular weight: 16765.76 Da        Isoelectric Point: 8.0993

>NTDB_id=781557 OT390_RS03580 WP_002852324.1 670706..671143(+) (Cj0683) [Campylobacter sp. CFSAN122748]
MNKAFTLLELVFVILILGILSSLSLSFINTTKDEVKILKLKMDYEMLSSALALMRSQMRLKNLNFPEILDNAQNNQAKEK
LFYCLNDCDYSLLDTPIYSDFKSWIKIGKNHYRFALNAKEMVEFIYDSKEGLLKCIGSSRCKDLI

Nucleotide


Download         Length: 438 bp        

>NTDB_id=781557 OT390_RS03580 WP_002852324.1 670706..671143(+) (Cj0683) [Campylobacter sp. CFSAN122748]
ATGAATAAAGCTTTTACTCTGCTTGAGCTTGTTTTTGTGATTTTGATTTTGGGAATTTTATCAAGCTTATCTTTATCTTT
TATCAATACTACAAAAGATGAGGTTAAAATTTTAAAATTAAAAATGGACTATGAAATGCTAAGCTCAGCTCTTGCTTTAA
TGCGTAGTCAAATGAGACTTAAAAATTTAAATTTTCCAGAAATTTTAGATAATGCGCAAAACAATCAAGCCAAAGAAAAA
CTCTTTTATTGTTTAAATGATTGTGATTATTCTTTGCTTGATACACCTATTTATTCTGATTTTAAATCTTGGATAAAAAT
AGGTAAAAATCACTATAGATTTGCATTAAATGCCAAAGAGATGGTTGAATTTATTTATGATTCTAAAGAAGGTTTGTTAA
AGTGTATAGGAAGTTCTAGATGCAAAGATCTGATATAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(2-23)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  Cj0683 Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

100

100

1