Detailed information    

insolico Bioinformatically predicted

Overview

Name   ceuB   Type   Machinery gene
Locus tag   OT625_RS06925 Genome accession   NZ_CP116951
Coordinates   1322172..1323152 (+) Length   326 a.a.
NCBI ID   WP_285949239.1    Uniprot ID   -
Organism   Campylobacter sp. CFSAN122778     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1317172..1328152
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OT625_RS06900 (OT625_06865) - 1318094..1318819 (-) 726 WP_002869557.1 phosphatidate cytidylyltransferase -
  OT625_RS06905 (OT625_06870) - 1318828..1319166 (-) 339 WP_002852397.1 hypothetical protein -
  OT625_RS06910 (OT625_06875) - 1319168..1320475 (-) 1308 WP_038401615.1 NFACT family protein -
  OT625_RS06915 (OT625_06880) - 1320537..1321112 (+) 576 WP_002867312.1 molybdenum cofactor guanylyltransferase -
  OT625_RS06920 (OT625_06885) - 1321109..1322098 (+) 990 WP_002864239.1 phospholipase A -
  OT625_RS06925 (OT625_06890) ceuB 1322172..1323152 (+) 981 WP_285949239.1 ABC transporter permease Machinery gene
  OT625_RS06930 (OT625_06895) - 1323145..1324083 (+) 939 WP_038816948.1 iron chelate uptake ABC transporter family permease subunit -
  OT625_RS06935 (OT625_06900) - 1324080..1324835 (+) 756 WP_406626419.1 ABC transporter ATP-binding protein -
  OT625_RS06940 (OT625_06905) - 1325006..1325695 (-) 690 WP_220520109.1 XRE family transcriptional regulator -
  OT625_RS06945 (OT625_06910) - 1325975..1326175 (+) 201 WP_002790505.1 hypothetical protein -

Sequence

Protein


Download         Length: 326 a.a.        Molecular weight: 35998.01 Da        Isoelectric Point: 9.7994

>NTDB_id=781539 OT625_RS06925 WP_285949239.1 1322172..1323152(+) (ceuB) [Campylobacter sp. CFSAN122778]
MRKDLFFKHILSLKVLIALLLFFGMISLFIGVISINVKDILNLNSTQLEIITLTRIPRLIAILLTGMSLSICGLIMQQLT
QNKFVSPTTAGTMDCAKFGILISLIFFTGASFFTQTIIASVFALLGSFIFIQILRKIKLKDVIFVPLIGLMFGGIISAIT
TFFAYALNYIQNIQGWLQGSMANVMQGNYELLYISLPLFILAYFLAHKITIVGMGEDIALNLGISYNGILFLGLMIVSII
TSLVIVSVGIIPFLGLIIPNLVALYLGDNLRKNLIYIALCGALFLLVCDIISRLVIFPFEMPLSITTGVLGSLIFIFLLL
KRKVYA

Nucleotide


Download         Length: 981 bp        

>NTDB_id=781539 OT625_RS06925 WP_285949239.1 1322172..1323152(+) (ceuB) [Campylobacter sp. CFSAN122778]
ATAAGGAAAGATTTATTTTTTAAGCATATATTGAGTTTAAAAGTGCTTATAGCTTTACTTTTATTCTTTGGAATGATAAG
TTTATTTATAGGAGTTATCAGTATCAATGTAAAAGATATCCTTAATCTTAACTCCACTCAACTAGAAATCATAACCCTTA
CAAGAATTCCTAGACTTATAGCGATTTTACTCACAGGAATGAGTCTTAGTATATGCGGGCTTATCATGCAACAACTCACG
CAAAATAAATTCGTTTCTCCAACTACGGCAGGAACTATGGATTGTGCTAAATTTGGCATACTTATTTCTTTAATATTTTT
TACTGGAGCATCTTTTTTCACTCAAACTATCATTGCTTCTGTATTTGCACTTTTGGGTTCTTTTATATTTATCCAAATTT
TAAGAAAAATCAAACTCAAAGATGTGATTTTTGTACCTTTGATAGGCTTGATGTTTGGAGGTATTATTAGTGCTATAACC
ACTTTTTTTGCCTATGCTTTAAATTATATACAAAATATCCAAGGTTGGCTACAAGGCAGTATGGCAAATGTTATGCAGGG
AAATTATGAATTGCTCTACATTTCTTTACCACTTTTTATACTTGCTTATTTTTTAGCTCATAAAATTACCATAGTTGGCA
TGGGTGAAGATATAGCTTTAAATCTTGGAATTTCTTATAATGGGATATTATTTTTAGGCTTGATGATTGTAAGCATTATC
ACTAGTTTAGTGATTGTAAGCGTTGGGATTATCCCTTTTTTAGGGCTAATTATCCCAAATTTAGTAGCTCTTTATCTAGG
TGATAATCTTAGAAAAAATCTTATCTATATAGCACTTTGTGGAGCTTTGTTTTTACTTGTTTGCGATATCATTTCAAGAC
TTGTCATCTTTCCTTTTGAAATGCCTTTAAGCATCACTACAGGTGTTTTAGGATCTTTAATCTTTATCTTTCTTTTGCTA
AAAAGGAAAGTTTATGCGTAA

Domains

Predicted by InterproScan.

FecCD transport family (FecCD)

(19-321)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ceuB Campylobacter jejuni subsp. jejuni 81-176

98.758

98.773

0.975