Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   QZL40_RS11485 Genome accession   NZ_CP129936
Coordinates   2434973..2435572 (-) Length   199 a.a.
NCBI ID   WP_005460088.1    Uniprot ID   Q87MQ4
Organism   Vibrio parahaemolyticus strain I13A     
Function   promote later steps in plasmid transformation (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2429973..2440572
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QZL40_RS11460 - 2430079..2430738 (-) 660 WP_005397228.1 transcriptional regulator -
  QZL40_RS11465 - 2430767..2432044 (-) 1278 WP_308390628.1 L-serine ammonia-lyase, iron-sulfur-dependent, subunit alpha -
  QZL40_RS11470 - 2432060..2432440 (-) 381 WP_005479566.1 RidA family protein -
  QZL40_RS11475 - 2432758..2434017 (+) 1260 WP_005494432.1 amino acid permease -
  QZL40_RS11480 aqpZ 2434224..2434922 (+) 699 WP_005460095.1 aquaporin Z -
  QZL40_RS11485 recR 2434973..2435572 (-) 600 WP_005460088.1 recombination mediator RecR Machinery gene
  QZL40_RS11490 - 2435602..2435931 (-) 330 WP_005460082.1 YbaB/EbfC family nucleoid-associated protein -
  QZL40_RS11495 dnaX 2436014..2438149 (-) 2136 WP_308390627.1 DNA polymerase III subunit gamma/tau -
  QZL40_RS11500 apt 2438158..2438703 (-) 546 WP_005460112.1 adenine phosphoribosyltransferase -
  QZL40_RS11505 - 2438869..2439273 (-) 405 WP_005494429.1 YbaN family protein -
  QZL40_RS11510 - 2439289..2439420 (-) 132 WP_005380608.1 hypothetical protein -

Sequence

Protein


Download         Length: 199 a.a.        Molecular weight: 21725.73 Da        Isoelectric Point: 5.7468

>NTDB_id=781480 QZL40_RS11485 WP_005460088.1 2434973..2435572(-) (recR) [Vibrio parahaemolyticus strain I13A]
MRTSHMLEQLMEALRCLPGVGPKSAQRMAFHLLQRDRKGGLQLADALSQSMTEIGHCAECRTFTEEEVCHICTNPKRQEN
GQICVVESPADIAAVEATGQYSGRYFVLMGHLSPLDGIGPSDIGLDVLDYRLRRGDISEVILATNPTVEGEATAHYIAEL
CREHQVEASRIAHGVPVGGELELVDGTTLSHSLLGRHKI

Nucleotide


Download         Length: 600 bp        

>NTDB_id=781480 QZL40_RS11485 WP_005460088.1 2434973..2435572(-) (recR) [Vibrio parahaemolyticus strain I13A]
ATGCGTACCAGTCATATGCTGGAACAATTGATGGAGGCCTTACGTTGTCTACCTGGGGTAGGTCCCAAGTCGGCGCAACG
TATGGCCTTTCATTTGTTACAGCGTGATAGAAAAGGCGGTCTGCAACTGGCAGATGCGCTGAGTCAGTCAATGACCGAAA
TTGGTCACTGTGCTGAATGTCGAACTTTTACTGAAGAAGAAGTTTGCCACATTTGTACTAACCCAAAACGCCAAGAAAAC
GGCCAAATTTGTGTAGTAGAAAGCCCGGCAGATATCGCAGCAGTTGAAGCGACGGGTCAATACTCCGGTCGATACTTTGT
GCTTATGGGGCATTTGTCTCCGCTTGATGGCATCGGTCCAAGTGATATTGGTTTAGACGTGCTTGATTATCGTCTACGTC
GAGGTGATATTTCTGAAGTGATCCTTGCAACCAACCCAACGGTTGAGGGAGAAGCTACTGCTCACTATATTGCGGAGTTG
TGCAGAGAGCACCAAGTCGAAGCTAGCCGTATCGCGCACGGTGTGCCTGTAGGTGGGGAGCTTGAGCTTGTAGATGGCAC
GACCTTGTCACACTCATTATTGGGTCGACATAAGATTTAA

Domains

Predicted by InterProScan.

RecR protein (RecR_ZnF)

(41-77)

Toprim domain (Toprim_4)

(81-172)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q87MQ4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

44.724

100

0.447
  recR Bacillus subtilis subsp. subtilis str. 168

43.216

100

0.432