Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiE   Type   Regulator
Locus tag   QZL40_RS07270 Genome accession   NZ_CP129936
Coordinates   1559479..1560459 (-) Length   326 a.a.
NCBI ID   WP_023584267.1    Uniprot ID   -
Organism   Vibrio parahaemolyticus strain I13A     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1554479..1565459
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QZL40_RS07260 - 1554976..1557420 (+) 2445 WP_308391277.1 collagenase -
  QZL40_RS07265 - 1557673..1559469 (-) 1797 WP_308390235.1 aminopeptidase P family protein -
  QZL40_RS07270 amiE 1559479..1560459 (-) 981 WP_023584267.1 ABC transporter ATP-binding protein Regulator
  QZL40_RS07275 - 1560469..1561452 (-) 984 WP_021449172.1 ABC transporter ATP-binding protein -
  QZL40_RS07280 - 1561463..1562395 (-) 933 WP_020840511.1 ABC transporter permease subunit -
  QZL40_RS07285 oppB 1562405..1563325 (-) 921 WP_062889246.1 oligopeptide ABC transporter permease OppB -
  QZL40_RS07290 - 1563492..1565102 (-) 1611 WP_274062574.1 peptide ABC transporter substrate-binding protein -

Sequence

Protein


Download         Length: 326 a.a.        Molecular weight: 36464.24 Da        Isoelectric Point: 8.1168

>NTDB_id=781467 QZL40_RS07270 WP_023584267.1 1559479..1560459(-) (amiE) [Vibrio parahaemolyticus strain I13A]
MNQKEVLLSARDLQVHFPVSRHLIPSRRKIVQAVNGIDLDVYRGETLGIVGESGCGKSTLARALLRLVEPTHGKLTWKGE
DMRGFSKNKLARRRQEFQMIFQDPSASLNPRLTISECIAEPLLTHQPQLKRAEVEKRVIEMMDKVGLLASQRNRYPHEFS
GGQCQRVGIARALILNPDLVVCDEPVSALDVSIQAQVINLLDDLKQEMGLTLVMIAHDLSVVRHISDRVMVMYLGKPMEV
GRYDQVFDDAQHPYTKALLSAVPIANPQLARNRDIQLLPGDLPSPLNPPSGCVFRTRCPEATELCGQQSPVKTGTEQHHI
YCSNMI

Nucleotide


Download         Length: 981 bp        

>NTDB_id=781467 QZL40_RS07270 WP_023584267.1 1559479..1560459(-) (amiE) [Vibrio parahaemolyticus strain I13A]
ATGAATCAGAAAGAAGTGTTATTGTCCGCTCGCGACCTGCAAGTGCATTTTCCTGTTTCGCGACACCTCATTCCGAGCCG
AAGAAAGATCGTACAAGCCGTCAACGGCATCGATTTGGATGTTTATCGAGGCGAAACGCTCGGCATTGTTGGCGAATCAG
GCTGCGGAAAATCCACCTTAGCACGTGCTCTGCTGCGCTTAGTTGAACCCACGCACGGTAAGCTCACTTGGAAAGGTGAA
GACATGCGTGGCTTCAGCAAAAACAAGTTAGCGCGTCGTCGCCAAGAATTTCAGATGATATTCCAAGACCCATCGGCGAG
CCTCAATCCGAGATTGACGATTTCAGAATGTATCGCAGAGCCGTTACTCACACACCAACCTCAACTCAAACGCGCCGAAG
TCGAAAAACGCGTCATTGAGATGATGGACAAAGTGGGTCTGTTGGCAAGCCAACGTAACCGATATCCGCATGAGTTTTCT
GGCGGTCAGTGCCAACGTGTTGGCATCGCGCGAGCCTTAATCCTCAATCCGGACTTGGTGGTGTGTGATGAACCCGTCAG
CGCATTGGATGTTTCGATTCAAGCGCAGGTCATTAATTTGCTCGACGACCTTAAACAAGAAATGGGACTGACACTGGTGA
TGATCGCTCATGACCTAAGCGTTGTGCGCCATATCAGCGACCGAGTGATGGTGATGTACCTTGGCAAACCAATGGAAGTG
GGACGCTACGACCAAGTGTTCGACGATGCTCAGCATCCCTACACAAAAGCATTGCTTTCTGCGGTACCGATTGCCAATCC
GCAACTTGCACGCAACCGCGACATCCAATTGTTGCCCGGAGACCTCCCTTCTCCGCTCAACCCACCCAGCGGTTGTGTTT
TTAGAACCCGATGCCCAGAAGCTACGGAACTATGTGGGCAGCAAAGCCCAGTCAAAACAGGCACTGAGCAACATCATATT
TACTGTTCAAACATGATTTAG

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(35-186)

Oligopeptide/dipeptide transporter, C-terminal region (oligo_HPY)

(238-305)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiE Streptococcus thermophilus LMG 18311

40.514

95.399

0.386
  amiE Streptococcus thermophilus LMD-9

40.514

95.399

0.386
  amiF Streptococcus salivarius strain HSISS4

45.455

84.356

0.383
  amiF Streptococcus thermophilus LMG 18311

45.788

83.742

0.383
  amiE Streptococcus salivarius strain HSISS4

39.744

95.706

0.38
  amiF Streptococcus thermophilus LMD-9

45.421

83.742

0.38
  oppD Streptococcus mutans UA159

38.339

96.012

0.368