Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiE   Type   Regulator
Locus tag   QZL36_RS01705 Genome accession   NZ_CP129932
Coordinates   357922..358779 (+) Length   285 a.a.
NCBI ID   WP_050548931.1    Uniprot ID   -
Organism   Vibrio parahaemolyticus isolate BM18B     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 352922..363779
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QZL36_RS01690 - 353979..355004 (+) 1026 WP_042763509.1 ABC transporter permease subunit -
  QZL36_RS01695 - 355006..356047 (+) 1042 Protein_315 ABC transporter permease -
  QZL36_RS01700 - 356086..357912 (+) 1827 WP_005458972.1 extracellular solute-binding protein -
  QZL36_RS01705 amiE 357922..358779 (+) 858 WP_050548931.1 ABC transporter ATP-binding protein Regulator
  QZL36_RS01710 - 358816..359694 (+) 879 WP_308385321.1 ATP-binding cassette domain-containing protein -
  QZL36_RS01715 - 359784..360209 (+) 426 WP_005458957.1 phosphate-starvation-inducible protein PsiE -
  QZL36_RS01720 - 360264..361130 (-) 867 WP_015296114.1 YicC/YloC family endoribonuclease -
  QZL36_RS01725 rph 361345..362061 (+) 717 WP_005459025.1 ribonuclease PH -
  QZL36_RS01730 pyrE 362166..362807 (+) 642 WP_005458955.1 orotate phosphoribosyltransferase -

Sequence

Protein


Download         Length: 285 a.a.        Molecular weight: 31608.68 Da        Isoelectric Point: 4.4974

>NTDB_id=781350 QZL36_RS01705 WP_050548931.1 357922..358779(+) (amiE) [Vibrio parahaemolyticus isolate BM18B]
MENDVILSVKDLEVEFITDDGPVKVLHGVNFDVRAGRTLGLVGESGSGKSVTSMSIMGLLPKPYGNIVNGEVNYRGTNLV
SLPAEEMYAMRGDRISIIFQDPMTALNPVHTIGRQLCEVLELHRPELGKKERESYAVEMLAKVKIPMPEKRLNEYPHNLS
GGMRQRVMIAMALACKPDILICDEPTTALDVTVQASILELMNELQEETGMAMIFITHDLGVVAEVCDDVAVMYGGRIVEK
AEIFELFDNPQHPYTERLMGLMPSLENEPKQMIDIKPIDASMFAS

Nucleotide


Download         Length: 858 bp        

>NTDB_id=781350 QZL36_RS01705 WP_050548931.1 357922..358779(+) (amiE) [Vibrio parahaemolyticus isolate BM18B]
ATGGAAAACGATGTAATTTTGAGTGTAAAAGATCTCGAAGTGGAATTCATCACGGATGATGGCCCGGTAAAAGTACTCCA
TGGCGTGAACTTTGATGTTCGCGCAGGACGAACGCTCGGTCTCGTTGGTGAGTCTGGCAGTGGTAAGAGCGTGACCTCCA
TGTCTATCATGGGACTGTTGCCAAAGCCTTACGGAAATATTGTCAATGGTGAAGTTAACTACCGAGGTACCAATCTGGTG
TCGCTACCAGCGGAAGAAATGTACGCCATGCGCGGCGACCGCATTTCGATCATTTTCCAAGACCCAATGACGGCGTTGAA
TCCAGTGCATACCATTGGCCGCCAACTGTGCGAAGTGTTGGAATTACACCGTCCTGAGTTAGGTAAAAAAGAGCGCGAAT
CCTACGCGGTAGAAATGCTGGCTAAAGTGAAAATTCCAATGCCAGAAAAGCGCCTCAACGAATACCCGCACAACCTATCT
GGTGGTATGCGCCAGCGCGTGATGATCGCAATGGCACTCGCATGTAAACCAGATATTTTGATTTGTGATGAGCCAACGAC
GGCACTGGATGTAACGGTACAGGCGTCTATCCTTGAACTAATGAATGAACTTCAAGAAGAAACGGGCATGGCAATGATCT
TCATTACCCATGATTTAGGCGTAGTAGCTGAAGTGTGTGATGACGTTGCGGTAATGTATGGTGGTCGTATTGTAGAAAAA
GCGGAGATTTTTGAGCTGTTTGACAATCCGCAGCACCCTTACACGGAACGTTTGATGGGCTTAATGCCAAGCTTGGAAAA
CGAACCTAAGCAGATGATTGATATCAAACCAATCGATGCCAGCATGTTTGCGAGCTAA

Domains

Predicted by InterProScan.

Oligopeptide/dipeptide transporter, C-terminal region (oligo_HPY)

(238-272)

ABC transporter (ABC_tran)

(26-186)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiE Streptococcus thermophilus LMG 18311

48.582

98.947

0.481
  amiE Streptococcus thermophilus LMD-9

48.582

98.947

0.481
  amiE Streptococcus salivarius strain HSISS4

48.582

98.947

0.481
  oppD Streptococcus mutans UA159

51.136

92.632

0.474
  amiF Streptococcus salivarius strain HSISS4

39.464

91.579

0.361