Detailed information    

insolico Bioinformatically predicted

Overview

Name   rpoN/rpoN1   Type   Machinery gene
Locus tag   QZL34_RS14135 Genome accession   NZ_CP129930
Coordinates   3008313..3009779 (+) Length   488 a.a.
NCBI ID   WP_315868320.1    Uniprot ID   -
Organism   Vibrio parahaemolyticus isolate BM24A     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3003313..3014779
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QZL34_RS14110 - 3004433..3005398 (+) 966 WP_005455122.1 calcium/sodium antiporter -
  QZL34_RS14115 kdsD 3005435..3006406 (+) 972 WP_020841311.1 arabinose-5-phosphate isomerase KdsD -
  QZL34_RS14120 lptC 3006497..3007060 (+) 564 WP_005467805.1 LPS export ABC transporter periplasmic protein LptC -
  QZL34_RS14125 lptA 3007041..3007535 (+) 495 WP_005467803.1 lipopolysaccharide transport periplasmic protein LptA -
  QZL34_RS14130 lptB 3007537..3008262 (+) 726 WP_005467801.1 LPS export ABC transporter ATP-binding protein -
  QZL34_RS14135 rpoN/rpoN1 3008313..3009779 (+) 1467 WP_315868320.1 RNA polymerase factor sigma-54 Machinery gene
  QZL34_RS14140 hpf 3009804..3010091 (+) 288 WP_005467451.1 ribosome hibernation promoting factor -
  QZL34_RS14145 ptsN 3010094..3010540 (+) 447 WP_005467453.1 PTS IIA-like nitrogen regulatory protein PtsN -
  QZL34_RS14150 rapZ 3010555..3011418 (+) 864 WP_005468663.1 RNase adapter RapZ -
  QZL34_RS14155 - 3011421..3011696 (+) 276 WP_005468661.1 HPr family phosphocarrier protein -
  QZL34_RS14160 mgtE 3011915..3013270 (+) 1356 WP_005468659.1 magnesium transporter -
  QZL34_RS14165 pmbA 3013347..3014690 (-) 1344 WP_005459755.1 metalloprotease PmbA -

Sequence

Protein


Download         Length: 488 a.a.        Molecular weight: 54824.63 Da        Isoelectric Point: 4.3417

>NTDB_id=781322 QZL34_RS14135 WP_315868320.1 3008313..3009779(+) (rpoN/rpoN1) [Vibrio parahaemolyticus isolate BM24A]
MKPSLQLKLGQQLAMTPQLQQAIRLLQLSTLDLQQEIQEALDSNPLLEVEEGHEEPQANGEDKSALETADNSANEPTEIE
VPDSSDVIEKSEISSELEIDTTWDDVYSANTGSTGLALDDDMPVYQGETTESLHDYLMWQLDLTPFSETDRTIAIAIIDA
IDDYGYLTLSPEEIHESFDNEDIELDEVEAVRKRIQQFDPLGVASRNLQECLLLQLATFPEDTPWLADAKMILADHIDHL
GNRDYKLVIKETKLKEADLREVLKLIQQLDPRPGSRITPDDTEYVIPDVSVFKDHGKWTVSINPDSIPKLKVNQQYAQLG
KGNSADSQYIRSNLQEAKWLIKSLESRNETLLKVARCIVEHQQDFFEYGEEAMKPMVLNDVALAVDMHESTISRVTTQKF
MHTPRGIFELKYFFSSHVSTDNGGECSSTAIRALIKKLVAAENTAKPLSDSKIAALLADQGIQVARRTIAKYRESLGIAP
SSQRKRLL

Nucleotide


Download         Length: 1467 bp        

>NTDB_id=781322 QZL34_RS14135 WP_315868320.1 3008313..3009779(+) (rpoN/rpoN1) [Vibrio parahaemolyticus isolate BM24A]
ATGAAACCTTCATTACAACTCAAGCTAGGTCAACAGTTAGCCATGACGCCACAGTTGCAACAAGCGATTCGCTTGCTGCA
GTTGTCGACTCTCGATCTTCAACAAGAAATCCAAGAAGCGTTGGACTCAAACCCACTATTGGAAGTTGAAGAAGGCCACG
AAGAACCTCAAGCAAATGGTGAAGACAAATCAGCACTCGAAACTGCTGACAACAGTGCCAACGAGCCAACAGAAATCGAA
GTTCCTGATAGTTCTGACGTCATCGAAAAGTCCGAAATCAGCTCAGAGCTTGAAATCGACACAACTTGGGATGATGTCTA
CAGCGCAAATACGGGCAGTACCGGTTTAGCGTTAGACGATGATATGCCGGTCTACCAAGGCGAAACCACAGAATCGCTGC
ACGATTACTTAATGTGGCAACTCGACTTAACGCCTTTCAGTGAAACCGACCGTACGATCGCCATTGCCATCATTGATGCG
ATTGACGATTATGGCTATCTGACCCTATCTCCTGAAGAGATTCACGAAAGCTTCGACAACGAAGATATTGAGTTGGATGA
AGTCGAAGCCGTACGCAAACGCATCCAACAGTTTGACCCGCTTGGTGTGGCATCGCGGAACCTGCAAGAATGCTTACTCC
TGCAACTTGCAACCTTCCCAGAAGACACGCCTTGGCTTGCAGATGCCAAAATGATTCTTGCCGATCACATCGATCACCTT
GGTAATCGCGATTACAAACTGGTCATCAAAGAAACTAAGCTAAAAGAAGCGGATCTACGCGAAGTATTAAAACTGATCCA
ACAGTTAGATCCTCGTCCGGGCAGCCGCATTACCCCAGACGACACAGAATACGTCATTCCGGACGTATCGGTATTTAAAG
ATCATGGGAAATGGACCGTTTCCATCAACCCTGACAGCATTCCAAAGTTAAAAGTTAACCAACAATACGCTCAATTAGGC
AAAGGCAACAGTGCGGATAGCCAGTACATTCGCAGCAATTTGCAAGAGGCAAAATGGTTAATTAAGAGCTTAGAGAGCAG
AAACGAGACGCTACTCAAAGTTGCAAGATGTATTGTTGAACATCAACAAGATTTCTTCGAGTATGGTGAAGAAGCCATGA
AGCCAATGGTACTCAATGATGTAGCCTTGGCGGTGGACATGCATGAATCCACAATATCTCGTGTTACGACACAAAAGTTC
ATGCATACGCCACGTGGCATTTTTGAATTGAAGTACTTCTTCTCCAGCCACGTCAGTACAGACAATGGCGGAGAATGTTC
GTCAACAGCAATCCGCGCACTCATTAAGAAACTGGTCGCGGCAGAGAATACTGCTAAACCACTTAGTGACAGTAAGATTG
CTGCTCTTCTGGCTGACCAAGGGATTCAGGTCGCAAGACGTACGATAGCTAAATATCGAGAATCCTTGGGTATTGCCCCT
TCAAGTCAGCGTAAACGCCTACTTTAA

Domains

Predicted by InterProScan.

Sigma-54, DNA binding domain (Sigma54_DBD)

(328-486)

Sigma-54 factor, core binding domain (Sigma54_CBD)

(129-316)

Sigma-54 factor, Activator interacting domain (AID) (Sigma54_AID)

(4-49)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rpoN/rpoN1 Ralstonia pseudosolanacearum GMI1000

44.444

100

0.459