Detailed information    

insolico Bioinformatically predicted

Overview

Name   treR   Type   Regulator
Locus tag   QZH48_RS02165 Genome accession   NZ_CP129879
Coordinates   437717..438433 (-) Length   238 a.a.
NCBI ID   WP_058206012.1    Uniprot ID   -
Organism   Lactococcus lactis subsp. lactis strain CAB701     
Function   regulate expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 432717..443433
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QZH48_RS02150 (QZH48_02150) cdaA 434412..435290 (+) 879 WP_003131542.1 diadenylate cyclase CdaA -
  QZH48_RS02155 (QZH48_02155) - 435280..436239 (+) 960 WP_038599257.1 CdaR family protein -
  QZH48_RS02160 (QZH48_02160) glmM 436285..437643 (+) 1359 WP_058206011.1 phosphoglucosamine mutase -
  QZH48_RS02165 (QZH48_02165) treR 437717..438433 (-) 717 WP_058206012.1 trehalose operon repressor Regulator
  QZH48_RS02170 (QZH48_02170) - 438544..439029 (+) 486 WP_015425865.1 PTS glucose transporter subunit IIA -
  QZH48_RS02175 (QZH48_02175) - 439166..440731 (+) 1566 WP_181022870.1 PTS transporter subunit EIIC -
  QZH48_RS02180 (QZH48_02180) - 440799..443108 (+) 2310 WP_301675781.1 glycoside hydrolase family 65 protein -

Sequence

Protein


Download         Length: 238 a.a.        Molecular weight: 27863.55 Da        Isoelectric Point: 6.4168

>NTDB_id=781174 QZH48_RS02165 WP_058206012.1 437717..438433(-) (treR) [Lactococcus lactis subsp. lactis strain CAB701]
MKKYEVILQDLEKKIFNDIYKTNDILPSENELSVNYESSRSTVRQALKILEEKGLIQRRHGYGSIVLAHDRLLFPISGLT
SYKELQTSMGFHSETEVIRFERLEINPKLSETTGFAVGEHAISILRRRKVDGKFSILDWDLFLEKYSEGLAPEHAKISTY
DYLEDTLGLDIAYAQKEVTIDFACEDDFKYLDLNPKDHHVVSVKSHVYLADNTLFQYTESRHQVDRFRFTEFARRQKR

Nucleotide


Download         Length: 717 bp        

>NTDB_id=781174 QZH48_RS02165 WP_058206012.1 437717..438433(-) (treR) [Lactococcus lactis subsp. lactis strain CAB701]
ATGAAGAAATATGAAGTGATTTTGCAAGATTTAGAAAAAAAGATTTTTAACGATATCTATAAAACGAACGATATTCTTCC
GAGTGAAAATGAGCTCTCTGTTAATTACGAGAGCAGTCGTTCAACAGTCAGACAGGCTTTAAAAATTTTAGAAGAGAAAG
GGCTTATTCAAAGACGACATGGCTATGGTAGCATTGTCCTCGCTCACGATAGGCTCCTTTTCCCTATCTCTGGCTTAACT
TCATACAAAGAACTACAAACCTCTATGGGTTTCCATAGTGAAACTGAGGTCATTCGCTTTGAAAGACTTGAAATTAACCC
TAAACTTTCAGAAACAACTGGTTTTGCCGTTGGGGAACATGCCATAAGTATTCTCAGAAGGCGCAAAGTAGATGGCAAAT
TTTCAATTTTAGATTGGGATTTATTTTTAGAAAAATATTCCGAAGGTTTAGCTCCAGAACATGCTAAAATTTCAACCTAT
GACTACTTAGAAGATACTCTAGGGCTTGACATTGCCTATGCCCAAAAGGAAGTCACAATTGATTTTGCCTGTGAAGATGA
CTTTAAATACCTTGACTTAAATCCCAAAGACCATCATGTCGTGTCTGTCAAATCTCATGTTTATCTTGCTGATAATACTC
TTTTTCAATATACTGAATCTCGACATCAAGTCGACCGCTTTCGTTTCACAGAATTTGCTAGACGACAAAAAAGATAA

Domains

Predicted by InterProScan.

Bacterial regulatory proteins, gntR family (GntR)

(4-66)

UTRA domain (UTRA)

(89-228)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  treR Streptococcus mutans UA159

45.992

99.58

0.458