Detailed information    

insolico Bioinformatically predicted

Overview

Name   recO   Type   Machinery gene
Locus tag   QZH48_RS00215 Genome accession   NZ_CP129879
Coordinates   42584..43339 (+) Length   251 a.a.
NCBI ID   WP_029344660.1    Uniprot ID   -
Organism   Lactococcus lactis subsp. lactis strain CAB701     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 37584..48339
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QZH48_RS00200 (QZH48_00200) - 38271..39446 (+) 1176 WP_098393041.1 pyridoxal phosphate-dependent aminotransferase -
  QZH48_RS00205 (QZH48_00205) - 39615..41114 (+) 1500 WP_179884583.1 M57 family metalloprotease -
  QZH48_RS00210 (QZH48_00210) - 41121..42374 (+) 1254 WP_301675746.1 hypothetical protein -
  QZH48_RS00215 (QZH48_00215) recO 42584..43339 (+) 756 WP_029344660.1 DNA repair protein RecO Machinery gene
  QZH48_RS00220 (QZH48_00220) - 43453..44334 (+) 882 WP_038598351.1 Rgg/GadR/MutR family transcriptional regulator -
  QZH48_RS00225 (QZH48_00225) - 44566..45843 (+) 1278 WP_038598355.1 radical SAM protein -
  QZH48_RS00230 (QZH48_00230) - 45847..47409 (+) 1563 WP_038598358.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 251 a.a.        Molecular weight: 28698.88 Da        Isoelectric Point: 6.1527

>NTDB_id=781159 QZH48_RS00215 WP_029344660.1 42584..43339(+) (recO) [Lactococcus lactis subsp. lactis strain CAB701]
MRDAETHGLVLYSRNYKEKDKLVKIFTESFGKRMFFVKNFGKSPYASSLQAFTDGKLTATINDGGFSFIEDVSEVVVYKN
ISSDIFINAHASYIISLADAAISDNQYDPGLYGFLKRSLELLDQGFDMEVVTNIFELQVLHRFGVSLNFSECAFCHKTVG
PFDFSYKFSGCLCPQHFDEDLRRSHLDPNVIYLVNLFQEISLDELKKISIKADMKLKIRQFIDGLYDEYVGIHLKSKKFL
DGMSGWADIMK

Nucleotide


Download         Length: 756 bp        

>NTDB_id=781159 QZH48_RS00215 WP_029344660.1 42584..43339(+) (recO) [Lactococcus lactis subsp. lactis strain CAB701]
ATGCGTGATGCCGAAACTCATGGTCTAGTGCTTTACAGTCGTAATTACAAAGAAAAAGATAAATTGGTCAAGATTTTTAC
AGAGTCTTTTGGTAAACGGATGTTTTTTGTCAAAAATTTTGGAAAATCCCCTTATGCTAGTTCCTTACAAGCTTTTACTG
ATGGAAAATTGACGGCAACGATTAATGACGGGGGATTTTCTTTTATCGAGGATGTCAGTGAAGTGGTCGTTTATAAAAAT
ATTAGTTCAGATATTTTCATCAATGCTCATGCTTCTTATATCATAAGTTTGGCTGATGCGGCCATTTCTGATAATCAATA
CGACCCAGGGCTTTATGGATTTCTAAAGCGAAGTTTAGAGCTTTTAGATCAAGGATTTGATATGGAAGTCGTGACTAACA
TTTTTGAATTACAAGTTCTTCATCGTTTTGGGGTTTCATTGAACTTCTCAGAATGTGCATTTTGTCATAAAACCGTTGGC
CCCTTTGATTTTTCTTATAAATTTAGTGGCTGCCTTTGTCCCCAACATTTTGATGAAGATTTACGACGGAGTCATCTTGA
CCCAAATGTGATTTATTTGGTCAATCTTTTTCAAGAAATATCTTTAGATGAACTCAAAAAAATCTCGATAAAAGCAGATA
TGAAACTAAAAATTCGTCAATTTATTGATGGGCTTTATGATGAATATGTCGGAATTCATCTCAAATCCAAAAAATTCTTG
GACGGAATGTCTGGGTGGGCAGATATTATGAAATAA

Domains

Predicted by InterProScan.

Recombination protein O N terminal (RecO_N)

(1-72)

Recombination protein O C terminal (RecO_C)

(83-237)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recO Streptococcus pneumoniae R6

53.659

98.008

0.526