Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGG   Type   Machinery gene
Locus tag   QZN16_RS01110 Genome accession   NZ_CP129876
Coordinates   190473..190844 (+) Length   123 a.a.
NCBI ID   WP_000601104.1    Uniprot ID   Q8E233
Organism   Streptococcus agalactiae strain NEM316     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 185473..195844
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QZN16_RS01075 - 186649..187014 (+) 366 WP_000285373.1 DUF1033 family protein -
  QZN16_RS01080 comGA 187187..188158 (+) 972 WP_000250808.1 competence type IV pilus ATPase ComGA Machinery gene
  QZN16_RS01085 comGB 188052..189095 (+) 1044 WP_223295592.1 competence type IV pilus assembly protein ComGB Machinery gene
  QZN16_RS01090 comGC/cglC 189092..189421 (+) 330 WP_000793380.1 competence type IV pilus major pilin ComGC Machinery gene
  QZN16_RS01095 comGD 189396..189809 (+) 414 WP_000244259.1 competence type IV pilus minor pilin ComGD Machinery gene
  QZN16_RS01100 comGE 189781..190080 (+) 300 WP_001867089.1 competence type IV pilus minor pilin ComGE Machinery gene
  QZN16_RS01105 comGF 190034..190495 (+) 462 WP_001874060.1 competence type IV pilus minor pilin ComGF Machinery gene
  QZN16_RS01110 comGG 190473..190844 (+) 372 WP_000601104.1 competence type IV pilus minor pilin ComGG Machinery gene
  QZN16_RS01115 comGH 190959..191933 (+) 975 WP_001008570.1 class I SAM-dependent methyltransferase Machinery gene
  QZN16_RS01120 - 191965..193158 (+) 1194 WP_000047535.1 acetate kinase -
  QZN16_RS01125 - 193309..193515 (+) 207 WP_000798242.1 helix-turn-helix transcriptional regulator -
  QZN16_RS01130 - 193574..193711 (+) 138 WP_001867090.1 hypothetical protein -
  QZN16_RS01135 - 193752..194207 (+) 456 WP_000905674.1 hypothetical protein -
  QZN16_RS01140 - 194276..194941 (+) 666 WP_000008111.1 type II CAAX endopeptidase family protein -
  QZN16_RS01145 proC 194962..195732 (-) 771 WP_001867096.1 pyrroline-5-carboxylate reductase -

Sequence

Protein


Download         Length: 123 a.a.        Molecular weight: 13879.09 Da        Isoelectric Point: 10.0693

>NTDB_id=781063 QZN16_RS01110 WP_000601104.1 190473..190844(+) (comGG) [Streptococcus agalactiae strain NEM316]
MILKKKLKAGILLQAIVLAAVFTLVLQFYLARILATERQYHSQIEASKAYLTAQLAYKTIEGDSISGKCYFTGGYASYLQ
EGNYLQVKVTLDKGGNYNHKFYRKTDTLQVPLKSNDNKASHKH

Nucleotide


Download         Length: 372 bp        

>NTDB_id=781063 QZN16_RS01110 WP_000601104.1 190473..190844(+) (comGG) [Streptococcus agalactiae strain NEM316]
ATGATTTTAAAGAAGAAACTTAAAGCTGGCATCCTTTTGCAAGCTATTGTATTGGCTGCTGTATTTACACTCGTCTTACA
GTTTTATCTAGCAAGAATATTGGCAACAGAAAGACAGTATCATAGCCAAATTGAAGCAAGTAAAGCTTATTTAACAGCGC
AGTTAGCTTATAAAACAATAGAAGGTGACTCCATATCAGGAAAATGTTATTTTACAGGAGGATATGCTTCATACCTCCAA
GAAGGGAACTATTTACAAGTTAAGGTTACATTGGATAAGGGAGGAAACTATAACCATAAGTTTTATCGTAAAACAGACAC
TCTCCAAGTACCTCTCAAGTCTAATGATAATAAAGCAAGCCATAAACATTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q8E233

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGG Streptococcus mutans UA140

44.554

82.114

0.366
  comGG Streptococcus mutans UA159

44.554

82.114

0.366