Detailed information    

insolico Bioinformatically predicted

Overview

Name   pptA   Type   Regulator
Locus tag   QZN14_RS01660 Genome accession   NZ_CP129875
Coordinates   289018..289752 (+) Length   244 a.a.
NCBI ID   WP_000589158.1    Uniprot ID   -
Organism   Streptococcus agalactiae COH1     
Function   export ComS (predicted from homology)   
Competence regulation

Genomic Context

Location: 284018..294752
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QZN14_RS01645 - 284941..286371 (+) 1431 WP_001217289.1 helix-turn-helix domain-containing protein -
  QZN14_RS01650 recP/tkt 286496..288481 (+) 1986 WP_000141859.1 transketolase Machinery gene
  QZN14_RS01655 - 288693..288998 (+) 306 WP_000711207.1 bacteriocin immunity protein -
  QZN14_RS01660 pptA 289018..289752 (+) 735 WP_000589158.1 ABC transporter ATP-binding protein Regulator
  QZN14_RS01665 - 289756..291360 (+) 1605 WP_001104587.1 ABC transporter permease -
  QZN14_RS01670 - 291568..292954 (-) 1387 Protein_261 PTS transporter subunit EIIC -
  QZN14_RS01675 proB 293095..293898 (+) 804 WP_000820348.1 glutamate 5-kinase -

Sequence

Protein


Download         Length: 244 a.a.        Molecular weight: 27546.69 Da        Isoelectric Point: 4.6741

>NTDB_id=780964 QZN14_RS01660 WP_000589158.1 289018..289752(+) (pptA) [Streptococcus agalactiae COH1]
MIKFEHVSKVYGEKEALSDLTLSIKDGEIFGLIGHNGAGKTTTISILTSIIDATYGQVYIDDLLLTEHRDQIKKKIGYVP
DSPDIFLNLTAEEYWYFLAKIYDVAPEDIEARITKLVDIFELEEQRYNPIESFSHGMRQKVIVIGALLPNPDIWILDEPL
TGLDPQASFDLKEMMKEHAKNGKTVIFSTHVLAVAEQLCDRIGILKQGKLIFVGSLGELKMQYPDKDLETIYLELAGRQA
NREG

Nucleotide


Download         Length: 735 bp        

>NTDB_id=780964 QZN14_RS01660 WP_000589158.1 289018..289752(+) (pptA) [Streptococcus agalactiae COH1]
ATGATTAAGTTTGAACATGTTTCGAAAGTATACGGGGAAAAAGAAGCTCTCAGTGATTTAACCCTCTCCATTAAAGATGG
TGAGATTTTTGGATTAATCGGTCACAATGGAGCAGGAAAAACAACGACAATTAGTATTCTAACATCTATTATTGATGCAA
CTTATGGCCAAGTCTATATTGATGACCTACTTTTGACAGAACATCGTGACCAAATTAAGAAAAAAATAGGTTATGTACCG
GACTCGCCAGATATTTTCTTGAATTTAACAGCAGAGGAATACTGGTACTTTTTAGCTAAAATTTATGATGTTGCCCCAGA
AGATATTGAAGCACGTATCACAAAATTGGTAGACATATTTGAACTAGAGGAGCAGCGCTATAATCCTATTGAAAGTTTTT
CACATGGTATGCGTCAAAAAGTCATTGTTATAGGTGCCCTTCTTCCAAATCCTGACATTTGGATTCTAGATGAGCCATTA
ACTGGTTTAGATCCTCAAGCTTCTTTTGATTTGAAAGAAATGATGAAAGAACATGCTAAAAATGGAAAAACAGTTATTTT
TTCAACACATGTCTTAGCAGTTGCAGAACAGTTATGCGACAGAATAGGTATTTTGAAACAAGGGAAATTAATCTTTGTCG
GTAGCTTAGGTGAGTTAAAAATGCAATATCCAGATAAAGATTTGGAAACTATCTATTTGGAATTAGCAGGACGTCAAGCT
AATAGGGAGGGATAA

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(17-160)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pptA Streptococcus thermophilus LMD-9

38.655

97.541

0.377
  pptA Streptococcus salivarius strain HSISS4

38.235

97.541

0.373