Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilZ   Type   Machinery gene
Locus tag   QY075_RS31105 Genome accession   NZ_CP129688
Coordinates   6617403..6617759 (+) Length   118 a.a.
NCBI ID   WP_003091119.1    Uniprot ID   A0A0H2ZD30
Organism   Pseudomonas aeruginosa strain PA2818     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 6612403..6622759
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QY075_RS31080 fabF 6612615..6613859 (+) 1245 WP_003104132.1 beta-ketoacyl-ACP synthase II -
  QY075_RS31085 pabC 6613859..6614674 (+) 816 WP_019485449.1 aminodeoxychorismate lyase -
  QY075_RS31090 mltG 6614680..6615729 (+) 1050 WP_004350892.1 endolytic transglycosylase MltG -
  QY075_RS31095 tmk 6615758..6616390 (+) 633 WP_003122486.1 dTMP kinase -
  QY075_RS31100 - 6616383..6617369 (+) 987 WP_003110200.1 DNA polymerase III subunit delta' -
  QY075_RS31105 pilZ 6617403..6617759 (+) 357 WP_003091119.1 PilZ domain-containing protein Machinery gene
  QY075_RS31110 - 6617774..6618550 (+) 777 WP_019485448.1 TatD family hydrolase -
  QY075_RS31115 - 6618776..6619909 (-) 1134 WP_003110201.1 aminotransferase class V-fold PLP-dependent enzyme -
  QY075_RS31120 - 6619995..6620633 (+) 639 WP_003091114.1 TetR/AcrR family transcriptional regulator -
  QY075_RS31125 - 6620800..6621696 (+) 897 WP_019485447.1 radical SAM protein -
  QY075_RS31130 - 6621761..6622393 (+) 633 WP_003091112.1 DUF4823 domain-containing protein -

Sequence

Protein


Download         Length: 118 a.a.        Molecular weight: 12903.98 Da        Isoelectric Point: 9.9969

>NTDB_id=780943 QY075_RS31105 WP_003091119.1 6617403..6617759(+) (pilZ) [Pseudomonas aeruginosa strain PA2818]
MSLPPNLGPRNGILSLTIKDKSVLYAAYMPFIRNGGLFIPTNKNYKLGDEVFMLLNLMEEPEKIPVAGKVVWITPKGAQG
NRAAGIGVQFNDGDNTARNKIETYLAGALKSDRPTHTM

Nucleotide


Download         Length: 357 bp        

>NTDB_id=780943 QY075_RS31105 WP_003091119.1 6617403..6617759(+) (pilZ) [Pseudomonas aeruginosa strain PA2818]
ATGAGTTTGCCACCCAATCTGGGGCCGCGTAACGGCATCCTGTCCTTGACCATCAAGGACAAGTCCGTGCTGTACGCCGC
CTACATGCCGTTCATCAGGAACGGCGGGCTGTTCATTCCCACCAACAAGAACTACAAGCTTGGCGACGAGGTCTTCATGC
TGCTCAACCTGATGGAAGAGCCGGAGAAGATCCCGGTGGCCGGCAAGGTCGTCTGGATCACCCCGAAGGGCGCTCAGGGC
AACCGTGCGGCGGGCATCGGCGTGCAGTTCAACGACGGTGACAACACCGCCCGCAACAAGATCGAAACCTACCTGGCCGG
GGCGCTGAAGTCGGACCGGCCGACCCACACGATGTAA

Domains

Predicted by InterProScan.

PilZ domain (PilZ)

(17-106)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0H2ZD30

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilZ Legionella pneumophila str. Paris

49.074

91.525

0.449
  pilZ Legionella pneumophila strain ERS1305867

49.074

91.525

0.449