Detailed information    

insolico Bioinformatically predicted

Overview

Name   sinR   Type   Regulator
Locus tag   PP185_RS06490 Genome accession   NZ_CP116892
Coordinates   1228891..1229214 (-) Length   107 a.a.
NCBI ID   WP_000578878.1    Uniprot ID   A0A6L7H7A6
Organism   Bacillus anthracis strain AN18-416_2     
Function   repression of rok; repression of degU; repression of spo0A (predicted from homology)   
Competence regulation

Genomic Context

Location: 1223891..1234214
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PP185_RS06465 (PP185_06465) - 1224198..1225484 (+) 1287 WP_000247037.1 D-alanyl-D-alanine carboxypeptidase family protein -
  PP185_RS06470 (PP185_06470) - 1225679..1226248 (+) 570 WP_000767813.1 signal peptidase I -
  PP185_RS06475 (PP185_06475) - 1226311..1226898 (+) 588 WP_000172839.1 CalY family protein -
  PP185_RS06480 (PP185_06480) - 1227060..1227824 (+) 765 WP_000917476.1 DUF4047 domain-containing protein -
  PP185_RS06485 (PP185_06485) calY 1228222..1228815 (+) 594 WP_000053732.1 biofilm matrix protein CalY -
  PP185_RS06490 (PP185_06490) sinR 1228891..1229214 (-) 324 WP_000578878.1 helix-turn-helix domain-containing protein Regulator
  PP185_RS06495 (PP185_06495) - 1229294..1229428 (-) 135 WP_000276214.1 anti-repressor SinI family protein -
  PP185_RS06500 (PP185_06500) inhA1 1229772..1232159 (+) 2388 WP_033646729.1 M6 family metalloprotease immune inhibitor InhA1 -
  PP185_RS06505 (PP185_06505) - 1232331..1233698 (+) 1368 WP_000116806.1 aldehyde dehydrogenase -

Sequence

Protein


Download         Length: 107 a.a.        Molecular weight: 12319.17 Da        Isoelectric Point: 9.6244

>NTDB_id=780876 PP185_RS06490 WP_000578878.1 1228891..1229214(-) (sinR) [Bacillus anthracis strain AN18-416_2]
MIGERIKRLRLQKGISLTELAEKAGVAKSYISSIERNLQKNPSIQFLEKIAAVLQIPVDTLLHDETTKEANLDSEWTQLV
KDAMNSGVSKEQFREFLEFTKWKQNQK

Nucleotide


Download         Length: 324 bp        

>NTDB_id=780876 PP185_RS06490 WP_000578878.1 1228891..1229214(-) (sinR) [Bacillus anthracis strain AN18-416_2]
ATGATTGGAGAACGTATAAAACGCCTTCGTTTACAAAAAGGTATTTCATTAACTGAACTTGCCGAAAAAGCTGGCGTTGC
TAAATCTTACATTAGTTCTATAGAACGAAATTTACAAAAGAACCCTTCCATTCAGTTTCTTGAAAAGATCGCAGCAGTTC
TACAAATTCCAGTTGATACTTTACTTCATGATGAAACAACAAAGGAAGCTAACCTAGACTCCGAATGGACACAGCTCGTC
AAAGATGCAATGAACTCTGGTGTCTCCAAAGAACAATTTCGTGAATTTCTTGAATTTACAAAATGGAAGCAAAATCAAAA
ATAA

Domains

Predicted by InterproScan.

Anti-repressor SinI (SinI)

(72-99)

Helix-turn-helix (HTH_3)

(6-60)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A6L7H7A6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sinR Bacillus subtilis subsp. subtilis str. 168

67.89

100

0.692