Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   QY075_RS08050 Genome accession   NZ_CP129688
Coordinates   1688917..1689513 (-) Length   198 a.a.
NCBI ID   WP_003087237.1    Uniprot ID   Q9I3H9
Organism   Pseudomonas aeruginosa strain PA2818     
Function   promote later steps in plasmid transformation (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1683917..1694513
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QY075_RS08025 - 1684311..1684460 (-) 150 Protein_1585 hypothetical protein -
  QY075_RS08030 - 1684553..1686136 (+) 1584 WP_074198044.1 NAD(P)/FAD-dependent oxidoreductase -
  QY075_RS08035 - 1686133..1687020 (+) 888 WP_003087246.1 SDR family oxidoreductase -
  QY075_RS08040 - 1687094..1687633 (+) 540 WP_019485054.1 CbrC family protein -
  QY075_RS08045 - 1687646..1688794 (-) 1149 WP_003111078.1 acyl-CoA dehydrogenase family protein -
  QY075_RS08050 recR 1688917..1689513 (-) 597 WP_003087237.1 recombination mediator RecR Machinery gene
  QY075_RS08055 - 1689592..1689918 (-) 327 WP_003087236.1 YbaB/EbfC family nucleoid-associated protein -
  QY075_RS08060 dnaX 1689964..1692042 (-) 2079 WP_031656772.1 DNA polymerase III subunit gamma/tau -
  QY075_RS08065 - 1692079..1692945 (+) 867 WP_019485533.1 ABC transporter substrate-binding protein -
  QY075_RS08070 - 1693654..1694217 (+) 564 WP_019485532.1 recombinase family protein -

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 21173.42 Da        Isoelectric Point: 6.0063

>NTDB_id=780863 QY075_RS08050 WP_003087237.1 1688917..1689513(-) (recR) [Pseudomonas aeruginosa strain PA2818]
MSFSPLIRQLIESLRILPGVGQKSAQRMALMLLERDRSGGLKLAQALTAAMEGVGHCRQCRTLSEEELCPQCADPRRDDS
LLCVVEGPLDVFAVEQTGYRGRYFVLKGHLSPLDGLGPEAIGIPELEARIRDGAFSEVILATNPTVEGEATAHYIAQLLA
GRGLTLSRIAHGVPLGGELELVDGGTLAHALAGRRPIS

Nucleotide


Download         Length: 597 bp        

>NTDB_id=780863 QY075_RS08050 WP_003087237.1 1688917..1689513(-) (recR) [Pseudomonas aeruginosa strain PA2818]
ATGAGTTTCAGCCCGCTGATCCGCCAACTGATCGAGTCCCTGCGCATTCTTCCCGGTGTCGGGCAGAAGTCGGCCCAGCG
CATGGCGCTGATGCTGCTGGAGCGCGATCGCAGCGGCGGCCTGAAGCTGGCCCAGGCGTTGACCGCCGCGATGGAAGGGG
TCGGTCATTGCCGGCAGTGCCGTACCCTCAGCGAGGAGGAGCTGTGTCCGCAGTGCGCCGACCCGCGACGCGACGACTCG
CTGCTCTGCGTGGTGGAAGGCCCGCTGGACGTATTCGCGGTGGAGCAGACCGGCTACCGCGGCCGCTATTTCGTGCTCAA
GGGACACCTGTCGCCGCTCGACGGCCTGGGGCCGGAGGCGATCGGCATTCCCGAACTGGAAGCGCGGATCAGGGACGGAG
CCTTCAGCGAGGTGATCCTCGCCACCAACCCCACCGTGGAAGGCGAGGCCACCGCCCACTATATCGCCCAGCTACTGGCC
GGCCGCGGCCTGACCTTGTCGCGTATCGCCCATGGCGTGCCGCTGGGTGGCGAGCTGGAGCTGGTCGATGGCGGCACCTT
GGCCCACGCCCTGGCCGGACGGCGGCCGATCTCCTGA

Domains

Predicted by InterProScan.

Toprim domain (Toprim_4)

(81-170)

RecR protein (RecR_ZnF)

(41-78)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  PDB 5Z2V

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

48.241

100

0.485
  recR Bacillus subtilis subsp. subtilis str. 168

48.469

98.99

0.48