Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA/comE1   Type   Machinery gene
Locus tag   QY069_RS24095 Genome accession   NZ_CP129687
Coordinates   5015154..5015483 (+) Length   109 a.a.
NCBI ID   WP_003104586.1    Uniprot ID   Q9HZ87
Organism   Pseudomonas aeruginosa strain PA2209     
Function   dsDNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 5010154..5020483
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QY069_RS24080 - 5010197..5011216 (+) 1020 WP_003113413.1 glycosyltransferase family 4 protein -
  QY069_RS24085 - 5011294..5012401 (+) 1108 Protein_4766 IS3 family transposase -
  QY069_RS24090 - 5012966..5014963 (+) 1998 WP_010895647.1 nucleoside-diphosphate sugar epimerase/dehydratase -
  QY069_RS24095 comEA/comE1 5015154..5015483 (+) 330 WP_003104586.1 ComEA family DNA-binding protein Machinery gene
  QY069_RS24105 - 5015700..5016896 (-) 1197 WP_003104588.1 amino acid aminotransferase -
  QY069_RS24110 uvrB 5017084..5019096 (+) 2013 WP_003104590.1 excinuclease ABC subunit UvrB Machinery gene

Sequence

Protein


Download         Length: 109 a.a.        Molecular weight: 11351.31 Da        Isoelectric Point: 8.0459

>NTDB_id=780826 QY069_RS24095 WP_003104586.1 5015154..5015483(+) (comEA/comE1) [Pseudomonas aeruginosa strain PA2209]
MHLIKSALLLILFACLPFSASAAPVAVAKNPLAATTPATTVSPGEQVNINTVDEAALIRGLNGVGEAKARAILEYRAAHG
PFVSVDQLLEVKGVGPALLEKNRARIVIE

Nucleotide


Download         Length: 330 bp        

>NTDB_id=780826 QY069_RS24095 WP_003104586.1 5015154..5015483(+) (comEA/comE1) [Pseudomonas aeruginosa strain PA2209]
ATGCACCTAATCAAATCCGCTCTGCTTCTCATCCTGTTCGCCTGTCTTCCGTTTTCGGCTTCCGCCGCACCGGTCGCCGT
CGCCAAGAATCCGCTGGCCGCAACGACACCTGCGACGACCGTGTCGCCGGGGGAGCAGGTCAATATCAATACGGTCGACG
AGGCCGCCCTGATACGGGGGCTCAACGGTGTCGGCGAGGCCAAGGCCAGGGCGATCCTCGAGTATCGTGCGGCCCATGGT
CCGTTCGTCTCGGTGGATCAACTGCTGGAAGTGAAAGGGGTAGGCCCGGCGTTGCTGGAGAAGAACCGGGCGCGGATCGT
CATCGAGTGA

Domains

Predicted by InterProScan.

Helix-hairpin-helix motif (HHH_3)

(44-106)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q9HZ87

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA/comE1 Glaesserella parasuis strain SC1401

40.385

95.413

0.385