Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilH   Type   Machinery gene
Locus tag   QY069_RS16145 Genome accession   NZ_CP129687
Coordinates   3370165..3370530 (+) Length   121 a.a.
NCBI ID   WP_003084587.1    Uniprot ID   A0A0H2ZKW2
Organism   Pseudomonas aeruginosa strain PA2209     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3365165..3375530
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QY069_RS16115 pyrR 3365787..3366299 (-) 513 WP_003084574.1 bifunctional pyr operon transcriptional regulator/uracil phosphoribosyltransferase PyrR -
  QY069_RS16120 ruvX 3366411..3366845 (-) 435 WP_003121753.1 Holliday junction resolvase RuvX -
  QY069_RS16125 - 3366845..3367414 (-) 570 WP_010793542.1 YqgE/AlgH family protein -
  QY069_RS16130 - 3367463..3368356 (-) 894 WP_003162015.1 energy transducer TonB -
  QY069_RS16135 gshB 3368503..3369456 (-) 954 WP_003100943.1 glutathione synthase -
  QY069_RS16140 pilG 3369711..3370118 (+) 408 WP_003084583.1 twitching motility response regulator PilG Regulator
  QY069_RS16145 pilH 3370165..3370530 (+) 366 WP_003084587.1 twitching motility response regulator PilH Machinery gene
  QY069_RS16150 - 3370581..3371117 (+) 537 WP_003084590.1 chemotaxis protein CheW -
  QY069_RS16155 pilJ 3371202..3373250 (+) 2049 WP_003100940.1 chemotaxis chemoreceptor PilJ -
  QY069_RS16160 pilK 3373311..3374186 (+) 876 WP_003100938.1 type 4 fimbrial methyltransferase PilK -

Sequence

Protein


Download         Length: 121 a.a.        Molecular weight: 13273.30 Da        Isoelectric Point: 5.1961

>NTDB_id=780809 QY069_RS16145 WP_003084587.1 3370165..3370530(+) (pilH) [Pseudomonas aeruginosa strain PA2209]
MARILIVDDSPTEMYKLTAMLEKHGHQVLKAENGGDGVALARQEKPDVVLMDIVMPGLNGFQATRQLTKDAETSAIPVII
VTTKDQETDKVWGKRQGARDYLTKPVDEETLLKTINAVLAG

Nucleotide


Download         Length: 366 bp        

>NTDB_id=780809 QY069_RS16145 WP_003084587.1 3370165..3370530(+) (pilH) [Pseudomonas aeruginosa strain PA2209]
ATGGCTCGTATTTTGATTGTTGATGACTCTCCGACCGAGATGTACAAGCTGACCGCCATGCTGGAAAAGCATGGTCACCA
GGTACTCAAGGCCGAGAACGGCGGCGACGGCGTCGCCCTGGCCCGCCAGGAAAAGCCCGACGTGGTCCTGATGGACATCG
TCATGCCCGGCCTCAACGGCTTCCAGGCGACCCGTCAATTGACCAAGGACGCCGAGACCAGCGCCATCCCGGTGATCATC
GTCACCACCAAGGACCAGGAGACCGACAAGGTCTGGGGCAAGCGCCAGGGCGCTCGCGACTACCTGACCAAGCCGGTGGA
CGAAGAGACCCTGCTGAAAACCATCAATGCGGTGCTGGCGGGCTGA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(4-116)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0H2ZKW2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilH Synechocystis sp. PCC 6803

36.975

98.347

0.364