Detailed information    

insolico Bioinformatically predicted

Overview

Name   tsaP   Type   Machinery gene
Locus tag   QY067_RS31115 Genome accession   NZ_CP129685
Coordinates   6505998..6507023 (-) Length   341 a.a.
NCBI ID   WP_003097294.1    Uniprot ID   A0A0H2ZJL6
Organism   Pseudomonas aeruginosa strain PA2500     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 6500998..6512023
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QY067_RS31090 aroE 6501200..6502024 (-) 825 WP_003097314.1 shikimate dehydrogenase -
  QY067_RS31095 hemF 6502082..6502999 (-) 918 WP_003097311.1 oxygen-dependent coproporphyrinogen oxidase -
  QY067_RS31100 - 6503190..6504167 (+) 978 WP_003097303.1 NADPH:quinone reductase -
  QY067_RS31105 - 6504177..6504734 (-) 558 WP_003097300.1 L-threonylcarbamoyladenylate synthase -
  QY067_RS31110 dprA 6504775..6505863 (-) 1089 WP_014602326.1 DNA-processing protein DprA Machinery gene
  QY067_RS31115 tsaP 6505998..6507023 (-) 1026 WP_003097294.1 LysM peptidoglycan-binding domain-containing protein Machinery gene
  QY067_RS31120 def 6507162..6507668 (+) 507 WP_003097293.1 peptide deformylase -
  QY067_RS31125 fmt 6507723..6508667 (+) 945 WP_023098410.1 methionyl-tRNA formyltransferase -
  QY067_RS31130 rsmB 6508664..6509968 (+) 1305 WP_014603454.1 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB -
  QY067_RS31135 trkA 6509995..6511368 (+) 1374 WP_003097289.1 Trk system potassium transporter TrkA -
  QY067_RS31140 - 6511517..6511834 (+) 318 WP_003097288.1 tetratricopeptide repeat protein -

Sequence

Protein


Download         Length: 341 a.a.        Molecular weight: 37586.01 Da        Isoelectric Point: 9.3358

>NTDB_id=780733 QY067_RS31115 WP_003097294.1 6505998..6507023(-) (tsaP) [Pseudomonas aeruginosa strain PA2500]
MRKSLVALLLLAASGLAQAQVDLREGHPDRYTVVRGDTLWDISGKFLRQPWKWPELWHANPQIQNPHLIYPGDTLSLVYV
DGQPRLVLNRGESRGTIKLSPKIRSTPIAEAIPTIPLDKINSFLLANRIVDDEKTFTSAPYIVAGNAERIVSGTGDRIYA
RGKFADGQPAYGIFRQGKVYIDPKTKEVLGINADDIGGGEVVATEGDVATLALTRTTQEVRLGDRLFPTEERAVNSTFMP
GEPSREVKGEIIDVPRGVTQIGQFDVVTLNRGQRDGLAEGNVLAIYKVGETVRDRVTGESVKIPDERAGLLMVFRTYKKL
SYALVLMASRPLSVTDRVQNP

Nucleotide


Download         Length: 1026 bp        

>NTDB_id=780733 QY067_RS31115 WP_003097294.1 6505998..6507023(-) (tsaP) [Pseudomonas aeruginosa strain PA2500]
ATGAGGAAATCACTAGTCGCCCTTCTGCTCCTTGCCGCGAGCGGTCTGGCGCAGGCCCAGGTCGACCTCAGGGAAGGGCA
TCCGGACCGCTACACGGTGGTCAGGGGCGATACCCTGTGGGACATCTCGGGGAAATTCCTCCGCCAGCCATGGAAGTGGC
CGGAACTCTGGCACGCCAACCCGCAGATCCAGAATCCCCACCTGATCTACCCCGGCGACACCCTCAGCCTGGTCTACGTC
GATGGCCAGCCGCGCCTGGTGCTGAACCGTGGCGAATCGCGCGGGACCATCAAGCTGTCGCCGAAGATCCGCAGCACGCC
GATCGCCGAGGCCATCCCGACCATCCCGCTGGACAAGATCAACAGCTTCCTGCTGGCCAACCGCATCGTCGATGACGAGA
AGACCTTCACCAGCGCGCCGTACATCGTCGCCGGCAACGCCGAGCGGATCGTCAGCGGCACCGGCGACCGCATCTACGCC
CGCGGCAAGTTCGCCGACGGCCAGCCGGCCTATGGCATCTTCCGCCAGGGCAAGGTCTACATCGATCCGAAGACCAAGGA
AGTCCTCGGCATCAACGCCGACGACATCGGCGGCGGCGAGGTGGTAGCCACCGAAGGCGACGTCGCGACCCTGGCGCTGA
CCCGCACCACCCAGGAAGTGCGCCTGGGCGACCGCCTGTTCCCCACCGAGGAGCGTGCGGTGAATTCCACCTTCATGCCC
GGCGAGCCGAGCCGCGAGGTGAAGGGCGAAATCATCGACGTACCGCGCGGCGTGACCCAGATCGGCCAGTTCGACGTGGT
CACCCTGAACCGTGGCCAGCGCGACGGGCTGGCCGAGGGCAACGTGCTGGCGATCTACAAGGTCGGCGAGACGGTGCGCG
ACCGCGTTACCGGTGAGTCGGTGAAGATTCCCGACGAACGCGCCGGCCTGCTGATGGTGTTCCGTACCTACAAGAAGCTG
AGCTACGCCCTGGTTCTGATGGCCAGCAGGCCGCTCTCGGTAACCGACAGGGTGCAGAATCCCTGA

Domains

Predicted by InterProScan.

LysM domain (LysM)

(31-76)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0H2ZJL6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  tsaP Acinetobacter baumannii D1279779

36.512

100

0.393