Detailed information    

insolico Bioinformatically predicted

Overview

Name   recO   Type   Machinery gene
Locus tag   PPM45_RS12355 Genome accession   NZ_CP116870
Coordinates   2419825..2420592 (-) Length   255 a.a.
NCBI ID   WP_003230055.1    Uniprot ID   A0AAE2SJ05
Organism   Bacillus subtilis subsp. subtilis strain Master_strain     
Function   ssDNA annealing; plasmid transformation (predicted from homology)   
DNA processing Homologous recombination

Genomic Context

Location: 2414825..2425592
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PPM45_RS12335 ppsR 2415000..2415812 (-) 813 WP_003230064.1 pyruvate, water dikinase regulatory protein -
  PPM45_RS12340 ccpN 2415838..2416476 (-) 639 WP_003237058.1 transcriptional regulator CcpN -
  PPM45_RS12345 glyS 2416609..2418648 (-) 2040 WP_003230059.1 glycine--tRNA ligase subunit beta -
  PPM45_RS12350 glyQ 2418641..2419528 (-) 888 WP_003226213.1 glycine--tRNA ligase subunit alpha -
  PPM45_RS12355 recO 2419825..2420592 (-) 768 WP_003230055.1 DNA repair protein RecO Machinery gene
  PPM45_RS12360 yqzL 2420629..2420772 (-) 144 WP_003230053.1 YqzL family protein -
  PPM45_RS12365 era 2420920..2421825 (-) 906 WP_003230051.1 GTPase Era -
  PPM45_RS12370 - 2421806..2422216 (-) 411 WP_003230049.1 cytidine deaminase -
  PPM45_RS12375 unpK 2422335..2422706 (-) 372 WP_004398824.1 diacylglycerol kinase family protein -
  PPM45_RS12380 ybeY 2422687..2423160 (-) 474 WP_003230039.1 rRNA maturation RNase YbeY -
  PPM45_RS12385 pgpH 2423161..2425296 (-) 2136 WP_010886570.1 cyclic-di-AMP phosphodiesterase PgpH -

Sequence

Protein


Download         Length: 255 a.a.        Molecular weight: 29328.02 Da        Isoelectric Point: 8.3080

>NTDB_id=780724 PPM45_RS12355 WP_003230055.1 2419825..2420592(-) (recO) [Bacillus subtilis subsp. subtilis strain Master_strain]
MLTKCEGIVLRTNDYGETNKIVTLLTREHGKIGVMARGAKKPNSRLSAVSQPFLYGSFLMQKTSGLGTLQQGEMILSMRG
IREDLFLTAYAAYVAELVDRGTEEKKPNPYLFEFILESLKQLNEGTDPDVITFIVQMKMLGVMGLYPELNHCVHCKSQDG
TFHFSVRDNGFICHRCFEKDPYRIPIKPQTARLLRLFYYFDLSRLGNVSLKEETKAELKQVIDLYYEEYSGLYLKSKRFL
DQMESMKHLMGENKS

Nucleotide


Download         Length: 768 bp        

>NTDB_id=780724 PPM45_RS12355 WP_003230055.1 2419825..2420592(-) (recO) [Bacillus subtilis subsp. subtilis strain Master_strain]
ATGCTGACAAAATGTGAAGGGATCGTTCTTCGCACAAATGATTACGGAGAGACGAATAAAATCGTAACATTACTGACAAG
AGAACACGGAAAAATAGGTGTTATGGCACGAGGCGCCAAAAAACCGAACAGCCGTTTATCAGCAGTCAGCCAGCCCTTTT
TGTATGGTTCTTTCTTAATGCAAAAAACATCGGGCCTCGGAACGCTTCAGCAGGGGGAAATGATCCTCAGCATGAGAGGC
ATCAGGGAAGACTTGTTTTTAACAGCATATGCTGCCTATGTTGCTGAGTTAGTCGACAGAGGCACAGAAGAAAAAAAGCC
AAATCCTTATTTATTTGAATTCATATTAGAATCATTAAAACAGTTGAATGAAGGAACAGATCCGGATGTTATCACCTTCA
TTGTTCAAATGAAGATGCTCGGTGTCATGGGCCTGTATCCTGAGCTGAATCATTGTGTACATTGTAAAAGCCAAGACGGA
ACCTTTCATTTCTCTGTTCGTGATAATGGTTTTATATGCCACCGCTGTTTTGAAAAAGATCCTTACAGGATACCGATTAA
ACCGCAAACGGCAAGGCTGTTAAGGCTCTTTTACTATTTTGATCTGTCGAGACTCGGCAATGTGTCCTTAAAAGAGGAAA
CAAAAGCTGAATTAAAGCAAGTGATTGATTTATATTACGAAGAATATTCGGGATTGTATTTAAAATCAAAGCGCTTTTTA
GATCAAATGGAAAGCATGAAACATCTTATGGGTGAAAACAAAAGTTGA

Domains

Predicted by InterproScan.

Recombination protein O C terminal (RecO_C)

(82-237)

Recombination protein O N terminal (RecO_N)

(1-75)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recO Bacillus subtilis subsp. subtilis str. 168

100

100

1