Detailed information    

insolico Bioinformatically predicted

Overview

Name   spo0A   Type   Regulator
Locus tag   PPM45_RS11825 Genome accession   NZ_CP116870
Coordinates   2328901..2329704 (-) Length   267 a.a.
NCBI ID   WP_003226427.1    Uniprot ID   -
Organism   Bacillus subtilis subsp. subtilis strain Master_strain     
Function   activation and repression of comK; repression of rok; repression of abrB (predicted from homology)   
Competence regulation

Genomic Context

Location: 2323901..2334704
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PPM45_RS11800 glpQB 2325047..2325778 (-) 732 WP_003230288.1 glycerophosphodiester phosphodiesterase -
  PPM45_RS11805 yqiI 2325857..2326477 (-) 621 WP_010886565.1 N-acetylmuramoyl-L-alanine amidase family protein -
  PPM45_RS11810 yqiH 2326492..2326785 (-) 294 WP_003230284.1 lipoprotein -
  PPM45_RS11815 - 2327093..2327245 (+) 153 WP_003230276.1 hypothetical protein -
  PPM45_RS11820 yqiG 2327318..2328436 (+) 1119 WP_004398691.1 NADH-dependent flavin oxidoreductase -
  PPM45_RS11825 spo0A 2328901..2329704 (-) 804 WP_003226427.1 sporulation transcription factor Spo0A Regulator
  PPM45_RS11830 spoIVB 2329980..2331260 (-) 1281 WP_004398697.1 SpoIVB peptidase -
  PPM45_RS11835 recN 2331435..2333165 (-) 1731 WP_003230267.1 DNA repair protein RecN Machinery gene
  PPM45_RS11840 argR 2333202..2333651 (-) 450 WP_003230265.1 arginine repressor ArgR -
  PPM45_RS11845 yqxC 2333749..2334594 (-) 846 WP_003230264.1 TlyA family RNA methyltransferase -

Sequence

Protein


Download         Length: 267 a.a.        Molecular weight: 29691.19 Da        Isoelectric Point: 6.3913

>NTDB_id=780713 PPM45_RS11825 WP_003226427.1 2328901..2329704(-) (spo0A) [Bacillus subtilis subsp. subtilis strain Master_strain]
MEKIKVCVADDNRELVSLLSEYIEGQEDMEVIGVAYNGQECLSLFKEKDPDVLVLDIIMPHLDGLAVLERLRESDLKKQP
NVIMLTAFGQEDVTKKAVDLGASYFILKPFDMENLVGHIRQVSGNASSVTHRAPSSQSSIIRSSQPEPKKKNLDASITSI
IHEIGVPAHIKGYLYLREAISMVYNDIELLGSITKVLYPDIAKKFNTTASRVERAIRHAIEVAWSRGNIDSISSLFGYTV
SMTKAKPTNSEFIAMVADKLRLEHKAS

Nucleotide


Download         Length: 804 bp        

>NTDB_id=780713 PPM45_RS11825 WP_003226427.1 2328901..2329704(-) (spo0A) [Bacillus subtilis subsp. subtilis strain Master_strain]
GTGGAGAAAATTAAAGTTTGTGTTGCTGATGATAATCGAGAGCTGGTAAGCCTGTTAAGTGAATATATAGAAGGACAGGA
AGACATGGAAGTGATCGGCGTTGCTTATAACGGACAGGAATGCCTGTCGCTGTTTAAAGAAAAAGATCCCGATGTGCTCG
TATTAGATATTATTATGCCGCATCTAGACGGACTTGCGGTTTTAGAGAGGCTGAGGGAATCAGATCTGAAAAAACAGCCG
AATGTCATTATGCTGACAGCCTTTGGGCAGGAAGATGTCACGAAAAAGGCCGTCGATTTAGGCGCGTCCTACTTTATTCT
CAAACCGTTTGATATGGAAAACCTTGTCGGCCATATCCGCCAGGTCAGCGGAAATGCCAGCAGTGTGACGCATCGTGCGC
CATCATCGCAAAGCAGTATTATACGCAGCAGCCAGCCTGAACCAAAGAAGAAAAATCTCGACGCGAGCATCACAAGCATT
ATCCATGAAATCGGCGTCCCAGCCCATATTAAAGGCTATCTCTATCTGCGCGAAGCAATCTCAATGGTATACAATGACAT
CGAATTGCTCGGCAGCATTACAAAAGTCCTCTATCCGGACATCGCCAAAAAATTTAACACAACCGCAAGCCGTGTAGAAA
GAGCGATCCGCCATGCAATTGAAGTGGCATGGAGCAGAGGAAACATTGATTCCATTTCCTCGTTGTTTGGTTATACTGTC
AGCATGACAAAAGCTAAACCTACCAACAGTGAATTCATTGCAATGGTTGCGGATAAGCTGAGGTTAGAGCATAAGGCTTC
TTAA

Domains

Predicted by InterproScan.

Sporulation initiation factor Spo0A C terminal (Spo0A_C)

(157-260)

Response regulator receiver domain (Response_reg)

(6-119)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  spo0A Bacillus subtilis subsp. subtilis str. 168

100

100

1