Detailed information    

insolico Bioinformatically predicted

Overview

Name   recU   Type   Machinery gene
Locus tag   PPM45_RS10840 Genome accession   NZ_CP116870
Coordinates   2151682..2152302 (+) Length   206 a.a.
NCBI ID   WP_004399067.1    Uniprot ID   -
Organism   Bacillus subtilis subsp. subtilis strain Master_strain     
Function   plasmid transformation; homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2146682..2157302
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PPM45_RS10800 ptsA 2147813..2148319 (-) 507 WP_009967573.1 PTS sugar transporter subunit IIA -
  PPM45_RS10805 ypqA 2148457..2148876 (+) 420 WP_004398640.1 Hsp20/alpha crystallin family protein -
  PPM45_RS10810 sppG 2148897..2149274 (-) 378 WP_004398696.1 YppG family protein -
  PPM45_RS10815 yppF 2149462..2149650 (+) 189 WP_003230690.1 YppF family protein -
  PPM45_RS10820 yppE 2149689..2150060 (-) 372 WP_003246080.1 YppE family protein -
  PPM45_RS10825 yppD 2150106..2150351 (-) 246 WP_004398488.1 YppD family protein -
  PPM45_RS10830 sspM 2150550..2150654 (+) 105 WP_003225606.1 acid-soluble spore protein SspM -
  PPM45_RS10835 yppC 2150679..2151641 (-) 963 WP_004398707.1 DUF2515 domain-containing protein -
  PPM45_RS10840 recU 2151682..2152302 (+) 621 WP_004399067.1 Holliday junction resolvase RecU Machinery gene
  PPM45_RS10845 ponA 2152324..2155068 (+) 2745 WP_004398589.1 transglycosylase domain-containing protein -
  PPM45_RS10850 ypoC 2155144..2155638 (-) 495 WP_009967579.1 YpoC family protein -
  PPM45_RS10855 nth 2155635..2156294 (-) 660 WP_009967580.1 endonuclease III -
  PPM45_RS10860 dnaD 2156313..2157011 (-) 699 WP_004398499.1 DNA replication protein DnaD -

Sequence

Protein


Download         Length: 206 a.a.        Molecular weight: 23959.09 Da        Isoelectric Point: 9.6240

>NTDB_id=780712 PPM45_RS10840 WP_004399067.1 2151682..2152302(+) (recU) [Bacillus subtilis subsp. subtilis strain Master_strain]
MIRYPNGKTFQPKHSVSSQNSQKRAPSYSNRGMTLEDDLNETNKYYLTNQIAVIHKKPTPVQIVNVHYPKRSAAVIKEAY
FKQSSTTDYNGIYKGRYIDFEAKETKNKTSFPLQNFHDHQIEHMKQVKAQDGICFVIISAFDQVYFLEADKLFYFWDRKE
KNGRKSIRKDELEETAYPISLGYAPRIDYISIIEQLYFSPSSGAKG

Nucleotide


Download         Length: 621 bp        

>NTDB_id=780712 PPM45_RS10840 WP_004399067.1 2151682..2152302(+) (recU) [Bacillus subtilis subsp. subtilis strain Master_strain]
GTGATTCGGTATCCTAATGGAAAAACATTTCAGCCGAAACATTCGGTTTCATCCCAAAACAGTCAGAAAAGGGCCCCGTC
TTACAGTAATCGCGGAATGACCCTCGAAGATGACTTAAACGAAACGAATAAGTATTATCTGACAAACCAAATTGCCGTTA
TACACAAAAAGCCGACACCTGTTCAAATTGTAAATGTCCATTATCCAAAAAGAAGTGCCGCAGTGATTAAAGAAGCTTAC
TTTAAACAATCATCGACAACAGACTACAATGGGATTTACAAAGGGCGGTATATTGATTTTGAGGCGAAAGAAACGAAAAA
CAAGACCTCTTTCCCCCTGCAGAATTTTCATGACCATCAAATCGAGCATATGAAGCAGGTAAAGGCTCAAGACGGTATTT
GTTTTGTTATTATATCCGCTTTCGACCAGGTTTATTTTTTGGAAGCCGATAAGCTGTTTTATTTCTGGGACAGAAAAGAA
AAAAACGGCAGAAAATCAATTCGAAAAGATGAGTTGGAAGAAACAGCTTATCCGATTTCTCTTGGATACGCACCCAGAAT
TGATTATATTAGTATTATTGAACAGCTTTATTTTTCGCCATCATCTGGTGCGAAAGGTTGA

Domains

Predicted by InterproScan.

Recombination protein U (RecU)

(31-193)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recU Bacillus subtilis subsp. subtilis str. 168

100

100

1