Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   PPM45_RS07635 Genome accession   NZ_CP116870
Coordinates   1463146..1463424 (+) Length   92 a.a.
NCBI ID   WP_003244728.1    Uniprot ID   A0A199WGU6
Organism   Bacillus subtilis subsp. subtilis strain Master_strain     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 1458146..1468424
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PPM45_RS07615 panEB 1459333..1460244 (+) 912 WP_003245639.1 ketopantoate reductase family protein -
  PPM45_RS07620 ampS 1460278..1461510 (-) 1233 WP_003232341.1 aminopeptidase -
  PPM45_RS07625 ykpC 1461620..1461754 (-) 135 WP_003238865.1 protein YkpC -
  PPM45_RS07630 mreBH 1461855..1462862 (-) 1008 WP_003245743.1 cell shape-determining protein MreBH -
  PPM45_RS07635 abrB 1463146..1463424 (+) 279 WP_003244728.1 transcriptional regulator AbhA Regulator
  PPM45_RS07640 kinC 1463614..1464900 (+) 1287 WP_003232333.1 two-component sensor histidine kinase KinC -
  PPM45_RS07645 ykqA 1464916..1465749 (+) 834 WP_003245146.1 gamma-glutamylcyclotransferase -
  PPM45_RS07650 ktrC 1465812..1466477 (+) 666 WP_003222311.1 Ktr system potassium transporter KtrC -
  PPM45_RS07655 ade 1466632..1468365 (+) 1734 WP_003245362.1 adenine deaminase -

Sequence

Protein


Download         Length: 92 a.a.        Molecular weight: 10256.07 Da        Isoelectric Point: 5.8808

>NTDB_id=780707 PPM45_RS07635 WP_003244728.1 1463146..1463424(+) (abrB) [Bacillus subtilis subsp. subtilis strain Master_strain]
MKSIGVVRKVDELGRIVMPIELRRALDIAIKDSIEFFVDGDKIILKKYKPHGVCLMTGEITSENKEYGNGKITLSPEGAQ
LLLEEIQAALKE

Nucleotide


Download         Length: 279 bp        

>NTDB_id=780707 PPM45_RS07635 WP_003244728.1 1463146..1463424(+) (abrB) [Bacillus subtilis subsp. subtilis strain Master_strain]
ATGAAATCAATAGGTGTTGTGAGAAAAGTAGATGAATTAGGCCGCATTGTCATGCCGATTGAGTTGAGACGGGCATTGGA
TATTGCCATAAAAGACAGCATTGAGTTTTTTGTTGACGGAGATAAAATTATCTTGAAAAAGTACAAACCTCATGGCGTTT
GTTTAATGACTGGAGAAATCACTTCAGAAAATAAAGAATACGGCAACGGTAAAATTACGCTAAGCCCTGAGGGTGCACAG
CTGCTTCTCGAAGAAATTCAAGCCGCTTTAAAAGAATAA

Domains

Predicted by InterproScan.

AbrB C-terminal domain (AbrB_C)

(53-88)

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(8-51)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A199WGU6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

58.242

98.913

0.576