Detailed information    

insolico Bioinformatically predicted

Overview

Name   kre   Type   Regulator
Locus tag   PPM45_RS07400 Genome accession   NZ_CP116870
Coordinates   1419841..1420305 (-) Length   154 a.a.
NCBI ID   WP_003232406.1    Uniprot ID   G4NVM0
Organism   Bacillus subtilis subsp. subtilis strain Master_strain     
Function   regulation of regulators (predicted from homology)   
Competence regulation

Genomic Context

Location: 1414841..1425305
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PPM45_RS07380 kinA 1415307..1417127 (+) 1821 WP_003245779.1 sporulation histidine kinase KinA -
  PPM45_RS07385 dapX 1417138..1418319 (-) 1182 WP_003232415.1 aminotransferase A -
  PPM45_RS07390 - 1418521..1418682 (-) 162 WP_003245246.1 hypothetical protein -
  PPM45_RS07395 cheV 1418886..1419797 (+) 912 WP_009967126.1 chemotaxis protein CheV -
  PPM45_RS07400 kre 1419841..1420305 (-) 465 WP_003232406.1 YkyB family protein Regulator
  PPM45_RS07405 ykuC 1420431..1421723 (-) 1293 WP_003245267.1 MFS transporter -
  PPM45_RS07410 ltdD 1421799..1422293 (-) 495 WP_010886500.1 L,D-transpeptidase family protein -
  PPM45_RS07415 ppeE 1422350..1423210 (-) 861 WP_003232400.1 metallophosphoesterase -
  PPM45_RS07420 fadH 1423353..1424117 (+) 765 WP_003232398.1 2,4-dienoyl-CoA reductase -

Sequence

Protein


Download         Length: 154 a.a.        Molecular weight: 17895.71 Da        Isoelectric Point: 10.3545

>NTDB_id=780705 PPM45_RS07400 WP_003232406.1 1419841..1420305(-) (kre) [Bacillus subtilis subsp. subtilis strain Master_strain]
MDDHAYTKDLQPTVENLSKAVYTVNRHAKTAPNPKYLYLLKKRALQKLVKEGKGKKIGLHFSKNPRFSQQQSDVLISIGD
YYFHMPPTKEDFEHLPHLGTLNQSYRNPKAQMSLTKAKHLLQEYVGMKEKPLVPNRQQPAYHKPVFKKLGESYF

Nucleotide


Download         Length: 465 bp        

>NTDB_id=780705 PPM45_RS07400 WP_003232406.1 1419841..1420305(-) (kre) [Bacillus subtilis subsp. subtilis strain Master_strain]
ATGGACGACCATGCATATACGAAAGATCTGCAGCCAACCGTAGAAAATCTTTCAAAAGCAGTTTACACTGTGAACCGCCA
TGCAAAAACCGCCCCCAACCCTAAATACCTATATCTGCTGAAAAAACGGGCTTTGCAAAAGCTTGTCAAAGAAGGTAAAG
GAAAGAAAATAGGGCTTCATTTTTCAAAAAATCCAAGGTTCAGCCAACAGCAATCGGACGTGCTTATCTCAATCGGAGAC
TACTATTTTCACATGCCTCCAACTAAAGAAGACTTCGAACATCTTCCGCATTTAGGTACACTTAATCAATCGTATCGAAA
TCCTAAAGCTCAAATGTCTTTAACAAAAGCGAAACACCTATTGCAAGAATATGTCGGCATGAAAGAAAAGCCGCTAGTGC
CAAATCGCCAGCAGCCAGCTTACCATAAACCGGTCTTTAAAAAACTTGGCGAGAGTTACTTTTAA

Domains

Predicted by InterproScan.

YkyB-like protein (YkyB)

(14-128)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G4NVM0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  kre Bacillus subtilis subsp. subtilis str. 168

100

100

1