Detailed information    

insolico Bioinformatically predicted

Overview

Name   med   Type   Regulator
Locus tag   PPM45_RS06125 Genome accession   NZ_CP116870
Coordinates   1186121..1187074 (+) Length   317 a.a.
NCBI ID   WP_003245494.1    Uniprot ID   A0AAE2SG99
Organism   Bacillus subtilis subsp. subtilis strain Master_strain     
Function   regulation of regulators (predicted from homology)   
Competence regulation

Genomic Context

Location: 1181121..1192074
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PPM45_RS06100 argF 1182953..1183912 (+) 960 WP_003232980.1 ornithine carbamoyltransferase -
  PPM45_RS06105 yjzC 1183998..1184177 (+) 180 WP_003245356.1 YjzC family protein -
  PPM45_RS06110 yjzD 1184223..1184408 (-) 186 WP_003245236.1 YjzD family protein -
  PPM45_RS06115 - 1184657..1185391 (+) 735 WP_003245223.1 hypothetical protein -
  PPM45_RS06120 - 1185473..1186030 (+) 558 WP_003232974.1 hypothetical protein -
  PPM45_RS06125 med 1186121..1187074 (+) 954 WP_003245494.1 transcriptional regulator Med Regulator
  PPM45_RS06130 comZ 1187089..1187280 (+) 192 WP_003224559.1 ComG operon transcriptional repressor ComZ Regulator
  PPM45_RS06135 yjzB 1187310..1187549 (-) 240 WP_003232972.1 spore coat protein YjzB -
  PPM45_RS06140 fabH 1187714..1188652 (+) 939 WP_003232971.1 beta-ketoacyl-ACP synthase III -
  PPM45_RS06145 fabF 1188675..1189916 (+) 1242 WP_003244890.1 beta-ketoacyl-ACP synthase II -
  PPM45_RS06150 yjaZ 1189992..1190777 (+) 786 WP_003232967.1 DUF2268 domain-containing protein -
  PPM45_RS06155 appD 1190969..1191955 (+) 987 WP_003232965.1 oligopeptide ABC transporter ATP-binding protein AppD -

Sequence

Protein


Download         Length: 317 a.a.        Molecular weight: 35310.80 Da        Isoelectric Point: 4.5457

>NTDB_id=780696 PPM45_RS06125 WP_003245494.1 1186121..1187074(+) (med) [Bacillus subtilis subsp. subtilis strain Master_strain]
MITRLVMIFSVLLLLSGCGQTPFKGKIEKVGMLFPDTINDLVWGTKGYKGLLNIQSKYNVDVYYKEGVKTEEDIINAIED
FHKRGVNLLYGHGSEYAEVFNLVGEDYPDMEFVISNAKAKADNVTSVHFSGEAMGFFGGMTAAHMSKTNQVGVIASFTWQ
PEVDGFIKGAKYENPDIEVNTKYTDHWDDDTTAVKLYQKMKNEGADVVYPAGDGYNVPVIQQIKKDGLYAIGYVTDQSDL
GENTVLTSTVQNVDKAYEIIAEQFNKGTLEGGDHYYDLNTGVVEMGTFSPLVDQDFQQRIAKLIKTYNKTGELPKNE

Nucleotide


Download         Length: 954 bp        

>NTDB_id=780696 PPM45_RS06125 WP_003245494.1 1186121..1187074(+) (med) [Bacillus subtilis subsp. subtilis strain Master_strain]
TTGATCACAAGGCTTGTCATGATCTTTTCTGTCCTCCTTTTATTGAGTGGATGTGGACAAACTCCGTTCAAAGGAAAAAT
TGAGAAGGTCGGCATGCTCTTTCCTGATACGATTAATGACCTCGTATGGGGCACAAAAGGGTATAAAGGATTACTGAATA
TACAATCCAAATACAATGTGGACGTCTATTATAAAGAAGGCGTTAAAACAGAAGAAGATATCATAAATGCGATTGAGGAT
TTTCATAAGAGGGGCGTCAATCTGCTCTACGGCCATGGGAGTGAATATGCTGAGGTGTTTAACTTGGTCGGCGAAGATTA
TCCAGATATGGAATTCGTCATTTCCAATGCGAAAGCGAAAGCTGATAATGTAACAAGTGTCCATTTTAGCGGGGAAGCAA
TGGGCTTTTTTGGAGGAATGACTGCTGCCCATATGTCGAAAACGAATCAGGTCGGTGTAATTGCTTCCTTTACGTGGCAG
CCTGAGGTTGACGGTTTTATCAAAGGGGCCAAGTATGAAAATCCGGATATAGAGGTAAATACGAAATATACGGATCATTG
GGATGATGATACAACAGCAGTAAAGCTTTATCAGAAAATGAAGAACGAAGGCGCGGATGTTGTGTATCCCGCCGGAGACG
GGTATAATGTTCCTGTTATTCAGCAAATCAAAAAAGACGGTCTTTATGCCATAGGCTACGTCACAGATCAATCGGATCTG
GGCGAGAATACCGTATTAACCAGCACGGTGCAAAATGTGGACAAGGCCTATGAAATCATTGCTGAACAATTTAATAAAGG
CACCCTTGAGGGCGGCGATCATTACTACGACCTGAACACGGGAGTCGTTGAGATGGGAACATTCAGCCCGCTCGTCGATC
AAGACTTTCAGCAAAGAATCGCCAAGCTGATCAAAACATACAACAAAACAGGCGAGCTGCCAAAAAACGAGTAA

Domains

Predicted by InterproScan.

ABC transporter substrate-binding protein PnrA-like (Bmp)

(27-317)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  med Bacillus subtilis subsp. subtilis str. 168

100

100

1