Detailed information    

insolico Bioinformatically predicted

Overview

Name   comK   Type   Regulator
Locus tag   PPM45_RS05670 Genome accession   NZ_CP116870
Coordinates   1096607..1097185 (+) Length   192 a.a.
NCBI ID   WP_003245329.1    Uniprot ID   A0A809FND1
Organism   Bacillus subtilis subsp. subtilis strain Master_strain     
Function   activate transcription of late competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1091607..1102185
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PPM45_RS20555 - 1092118..1092633 (-) 516 WP_326255844.1 methyl-accepting chemotaxis protein -
  PPM45_RS20560 - 1092922..1093500 (-) 579 Protein_1046 protoglobin domain-containing protein -
  PPM45_RS05655 comW 1093555..1095084 (-) 1530 WP_003245031.1 FAD-dependent oxidoreductase -
  PPM45_RS05660 yhxC 1095196..1096053 (+) 858 WP_003245662.1 SDR family oxidoreductase -
  PPM45_RS05665 yhzC 1096081..1096314 (-) 234 WP_003233142.1 IDEAL domain-containing protein -
  PPM45_RS05670 comK 1096607..1097185 (+) 579 WP_003245329.1 competence transcription factor ComK Regulator
  PPM45_RS05675 yhxD 1097232..1098131 (-) 900 WP_003245421.1 SDR family oxidoreductase -
  PPM45_RS05680 yhjA 1098348..1098617 (+) 270 WP_003233136.1 excalibur calcium-binding domain-containing protein -
  PPM45_RS05685 yhjB 1098660..1100129 (-) 1470 WP_003233134.1 sodium:solute symporter family protein -
  PPM45_RS05690 yhjC 1100126..1100326 (-) 201 WP_003224377.1 DUF3311 domain-containing protein -
  PPM45_RS05695 - 1100534..1100896 (-) 363 WP_003233132.1 hypothetical protein -
  PPM45_RS05700 yhjE 1101048..1101671 (+) 624 WP_010886465.1 TVP38/TMEM64 family protein -
  PPM45_RS05705 lepB 1101673..1102179 (+) 507 WP_003233128.1 signal peptidase I -

Sequence

Protein


Download         Length: 192 a.a.        Molecular weight: 22429.68 Da        Isoelectric Point: 7.7153

>NTDB_id=780693 PPM45_RS05670 WP_003245329.1 1096607..1097185(+) (comK) [Bacillus subtilis subsp. subtilis strain Master_strain]
MSQKTDAPLESYEVNGATIAVLPEEIDGKICSKIIEKDCVFYVNMKPLQIVDRSCRFFGSSYAGRKAGTYEVTKISHKPP
IMVDPSNQIFLFPTLSSTRPQCGWISHVHVKEFKATEFDDTEVTFSNGKTMELPISYNSFENQVYRTAWLRTKFQDRIDH
RVPKRQEFMLYPKEERTKMIYDFILRELGERY

Nucleotide


Download         Length: 579 bp        

>NTDB_id=780693 PPM45_RS05670 WP_003245329.1 1096607..1097185(+) (comK) [Bacillus subtilis subsp. subtilis strain Master_strain]
ATGAGTCAGAAAACAGACGCACCTTTAGAATCGTATGAAGTGAACGGCGCAACAATTGCCGTGCTGCCAGAAGAAATAGA
CGGCAAAATCTGTTCCAAAATTATTGAAAAAGATTGCGTGTTTTATGTAAACATGAAGCCGCTGCAAATTGTCGACAGAA
GCTGCCGATTTTTTGGATCAAGCTATGCGGGAAGAAAAGCAGGAACTTATGAAGTGACAAAAATTTCACACAAGCCGCCG
ATCATGGTGGACCCTTCGAACCAAATCTTTTTATTCCCTACACTTTCTTCGACAAGACCCCAATGCGGCTGGATTTCCCA
TGTGCATGTAAAAGAATTCAAAGCGACTGAATTCGACGATACGGAAGTGACGTTTTCCAATGGGAAAACGATGGAGCTGC
CGATCTCTTATAATTCGTTCGAGAACCAGGTATACCGAACAGCGTGGCTCAGAACCAAATTCCAAGACAGAATCGACCAC
CGCGTGCCGAAAAGACAGGAATTTATGCTGTACCCGAAAGAAGAGCGGACGAAGATGATTTATGATTTTATTTTGCGTGA
GCTCGGGGAACGGTATTAG

Domains

Predicted by InterproScan.

ComK protein (ComK)

(10-158)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A809FND1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comK Bacillus subtilis subsp. subtilis str. 168

100

100

1