Detailed information    

insolico Bioinformatically predicted

Overview

Name   nucA/comI   Type   Machinery gene
Locus tag   PPM45_RS01985 Genome accession   NZ_CP116870
Coordinates   372161..372610 (-) Length   149 a.a.
NCBI ID   WP_003246436.1    Uniprot ID   A0AAE2SFQ0
Organism   Bacillus subtilis subsp. subtilis strain Master_strain     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 367161..377610
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PPM45_RS01950 yckA 367312..367992 (-) 681 WP_003234624.1 amino acid ABC transporter permease -
  PPM45_RS01955 yckB 368002..368865 (-) 864 WP_009966510.1 transporter substrate-binding domain-containing protein -
  PPM45_RS01960 - 369027..369224 (+) 198 WP_119122841.1 hypothetical protein -
  PPM45_RS01965 yckC 369243..369698 (+) 456 WP_003246356.1 RDD family protein -
  PPM45_RS01970 yckD 369780..370112 (+) 333 WP_003246247.1 YckD family protein -
  PPM45_RS01975 bglC 370266..371699 (+) 1434 WP_003246242.1 6-phospho-beta-glucosidase -
  PPM45_RS01980 nin/comJ 371736..372134 (-) 399 WP_003246342.1 DNA-entry nuclease inhibitor Regulator
  PPM45_RS01985 nucA/comI 372161..372610 (-) 450 WP_003246436.1 DNA-entry nuclease Machinery gene
  PPM45_RS01990 tlpC 372778..374499 (-) 1722 WP_003246498.1 methyl-accepting chemotaxis protein TlpC -
  PPM45_RS01995 hxlB 374610..375167 (-) 558 WP_003246343.1 6-phospho-3-hexuloisomerase -
  PPM45_RS02000 hxlA 375173..375805 (-) 633 WP_003246452.1 3-hexulose-6-phosphate synthase -
  PPM45_RS02005 hxlR 376039..376401 (+) 363 WP_003246265.1 transcriptional activator HxlR -

Sequence

Protein


Download         Length: 149 a.a.        Molecular weight: 16486.48 Da        Isoelectric Point: 4.6274

>NTDB_id=780678 PPM45_RS01985 WP_003246436.1 372161..372610(-) (nucA/comI) [Bacillus subtilis subsp. subtilis strain Master_strain]
MNITTDIIKTILLVIVIIAAAAVGLIKGDFFSADQKTSQTKEYDETMAFPSDRYPETAKHIKDAINEGHSEVCTIDRDGA
EERREQSLKDVPSKKGYDRDEWPMAMCKEGGEGASVEYISPADNRGAGSWVGHRLTDYPDGTKVLFTIQ

Nucleotide


Download         Length: 450 bp        

>NTDB_id=780678 PPM45_RS01985 WP_003246436.1 372161..372610(-) (nucA/comI) [Bacillus subtilis subsp. subtilis strain Master_strain]
GTGAACATCACGACGGACATCATAAAAACGATACTTCTCGTCATCGTCATCATAGCAGCTGCAGCTGTCGGCCTGATAAA
AGGAGACTTTTTCTCAGCTGATCAAAAAACGTCTCAAACGAAAGAATATGATGAAACAATGGCCTTCCCATCTGACCGGT
ATCCCGAAACTGCCAAGCATATTAAGGATGCGATAAATGAGGGGCACTCAGAGGTGTGCACTATTGACAGAGACGGAGCT
GAAGAACGCCGCGAGCAATCATTAAAGGACGTACCTTCCAAAAAGGGGTATGACAGAGATGAATGGCCAATGGCCATGTG
CAAAGAAGGCGGTGAGGGAGCTTCTGTAGAATACATTTCTCCCGCTGACAACCGCGGAGCAGGCTCTTGGGTCGGGCATC
GGCTTACCGATTACCCAGACGGCACAAAGGTTTTATTCACAATTCAGTAA

Domains

Predicted by InterproScan.

Deoxyribonuclease NucA/NucB (DNase_NucA_NucB)

(53-148)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  nucA/comI Bacillus subtilis subsp. subtilis str. 168

100

100

1