Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   PPM45_RS00245 Genome accession   NZ_CP116870
Coordinates   44848..45138 (-) Length   96 a.a.
NCBI ID   WP_003226760.1    Uniprot ID   A0A7G9PCZ4
Organism   Bacillus subtilis subsp. subtilis strain Master_strain     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 39848..50138
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PPM45_RS00205 darA 39871..40200 (+) 330 WP_003242755.1 cyclic di-AMP receptor DarA -
  PPM45_RS00210 yaaR 40213..40653 (+) 441 WP_009966249.1 YaaR family protein -
  PPM45_RS00215 holB 40665..41654 (+) 990 WP_003244417.1 DNA polymerase III subunit delta' -
  PPM45_RS00220 ricT 41657..42484 (+) 828 WP_003243571.1 competence/sporulation regulator complex protein RicT -
  PPM45_RS00225 yabA 42499..42858 (+) 360 WP_003218308.1 replication initiation-control protein YabA -
  PPM45_RS00230 trmNF 42917..43660 (+) 744 WP_003244526.1 tRNA1(Val) (adenine(37)-N6)-methyltransferase -
  PPM45_RS00235 yazA 43647..43946 (+) 300 WP_003242983.1 GIY-YIG nuclease family protein -
  PPM45_RS00240 rsmI 43921..44799 (+) 879 WP_003243457.1 16S rRNA (cytidine(1402)-2'-O)-methyltransferase -
  PPM45_RS00245 abrB 44848..45138 (-) 291 WP_003226760.1 transition state genes transcriptional regulator AbrB Regulator
  PPM45_RS00250 metG 45633..47627 (+) 1995 WP_003226758.1 methionine--tRNA ligase -
  PPM45_RS00255 dayD 47706..48473 (+) 768 WP_003226756.1 TatD family hydrolase -
  PPM45_RS00260 yabE 48629..49942 (+) 1314 WP_003226754.1 ubiquitin-like domain-containing protein -

Sequence

Protein


Download         Length: 96 a.a.        Molecular weight: 10772.62 Da        Isoelectric Point: 6.3482

>NTDB_id=780673 PPM45_RS00245 WP_003226760.1 44848..45138(-) (abrB) [Bacillus subtilis subsp. subtilis strain Master_strain]
MFMKSTGIVRKVDELGRVVIPIELRRTLGIAEKDALEIYVDDEKIILKKYKPNMTCQVTGEVSDDNLKLAGGKLVLSKEG
AEQIISEIQNQLQNLK

Nucleotide


Download         Length: 291 bp        

>NTDB_id=780673 PPM45_RS00245 WP_003226760.1 44848..45138(-) (abrB) [Bacillus subtilis subsp. subtilis strain Master_strain]
ATGTTTATGAAATCTACTGGTATTGTACGTAAAGTTGATGAATTAGGACGTGTAGTTATTCCTATCGAACTGCGTCGTAC
TCTTGGAATCGCAGAAAAAGATGCTCTTGAAATCTATGTTGATGATGAAAAAATCATCCTTAAAAAATATAAACCAAACA
TGACTTGCCAAGTAACTGGTGAAGTTTCTGATGATAACCTTAAACTTGCAGGCGGTAAATTGGTTCTTAGTAAAGAAGGC
GCTGAGCAAATCATCAGCGAAATCCAAAACCAGCTTCAAAACCTTAAATAA

Domains

Predicted by InterproScan.

AbrB C-terminal domain (AbrB_C)

(55-90)

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(10-52)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7G9PCZ4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

100

100

1