Detailed information    

insolico Bioinformatically predicted

Overview

Name   recO   Type   Machinery gene
Locus tag   PPM34_RS11700 Genome accession   NZ_CP116869
Coordinates   2291674..2292441 (-) Length   255 a.a.
NCBI ID   WP_003230055.1    Uniprot ID   A0AAE2SJ05
Organism   Bacillus subtilis subsp. subtilis strain MGP001     
Function   ssDNA annealing; plasmid transformation (predicted from homology)   
DNA processing Homologous recombination

Genomic Context

Location: 2286674..2297441
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PPM34_RS11680 ppsR 2286849..2287661 (-) 813 WP_003230064.1 pyruvate, water dikinase regulatory protein -
  PPM34_RS11685 ccpN 2287687..2288325 (-) 639 WP_003237058.1 transcriptional regulator CcpN -
  PPM34_RS11690 glyS 2288458..2290497 (-) 2040 WP_003230059.1 glycine--tRNA ligase subunit beta -
  PPM34_RS11695 glyQ 2290490..2291377 (-) 888 WP_003226213.1 glycine--tRNA ligase subunit alpha -
  PPM34_RS11700 recO 2291674..2292441 (-) 768 WP_003230055.1 DNA repair protein RecO Machinery gene
  PPM34_RS11705 yqzL 2292478..2292621 (-) 144 WP_003230053.1 YqzL family protein -
  PPM34_RS11710 era 2292769..2293674 (-) 906 WP_003230051.1 GTPase Era -
  PPM34_RS11715 - 2293655..2294065 (-) 411 WP_003230049.1 cytidine deaminase -
  PPM34_RS11720 unpK 2294184..2294555 (-) 372 WP_004398824.1 diacylglycerol kinase family protein -
  PPM34_RS11725 ybeY 2294536..2295009 (-) 474 WP_003230039.1 rRNA maturation RNase YbeY -
  PPM34_RS11730 pgpH 2295010..2297145 (-) 2136 WP_010886570.1 cyclic-di-AMP phosphodiesterase PgpH -

Sequence

Protein


Download         Length: 255 a.a.        Molecular weight: 29328.02 Da        Isoelectric Point: 8.3080

>NTDB_id=780639 PPM34_RS11700 WP_003230055.1 2291674..2292441(-) (recO) [Bacillus subtilis subsp. subtilis strain MGP001]
MLTKCEGIVLRTNDYGETNKIVTLLTREHGKIGVMARGAKKPNSRLSAVSQPFLYGSFLMQKTSGLGTLQQGEMILSMRG
IREDLFLTAYAAYVAELVDRGTEEKKPNPYLFEFILESLKQLNEGTDPDVITFIVQMKMLGVMGLYPELNHCVHCKSQDG
TFHFSVRDNGFICHRCFEKDPYRIPIKPQTARLLRLFYYFDLSRLGNVSLKEETKAELKQVIDLYYEEYSGLYLKSKRFL
DQMESMKHLMGENKS

Nucleotide


Download         Length: 768 bp        

>NTDB_id=780639 PPM34_RS11700 WP_003230055.1 2291674..2292441(-) (recO) [Bacillus subtilis subsp. subtilis strain MGP001]
ATGCTGACAAAATGTGAAGGGATCGTTCTTCGCACAAATGATTACGGAGAGACGAATAAAATCGTAACATTACTGACAAG
AGAACACGGAAAAATAGGTGTTATGGCACGAGGCGCCAAAAAACCGAACAGCCGTTTATCAGCAGTCAGCCAGCCCTTTT
TGTATGGTTCTTTCTTAATGCAAAAAACATCGGGCCTCGGAACGCTTCAGCAGGGGGAAATGATCCTCAGCATGAGAGGC
ATCAGGGAAGACTTGTTTTTAACAGCATATGCTGCCTATGTTGCTGAGTTAGTCGACAGAGGCACAGAAGAAAAAAAGCC
AAATCCTTATTTATTTGAATTCATATTAGAATCATTAAAACAGTTGAATGAAGGAACAGATCCGGATGTTATCACCTTCA
TTGTTCAAATGAAGATGCTCGGTGTCATGGGCCTGTATCCTGAGCTGAATCATTGTGTACATTGTAAAAGCCAAGACGGA
ACCTTTCATTTCTCTGTTCGTGATAATGGTTTTATATGCCACCGCTGTTTTGAAAAAGATCCTTACAGGATACCGATTAA
ACCGCAAACGGCAAGGCTGTTAAGGCTCTTTTACTATTTTGATCTGTCGAGACTCGGCAATGTGTCCTTAAAAGAGGAAA
CAAAAGCTGAATTAAAGCAAGTGATTGATTTATATTACGAAGAATATTCGGGATTGTATTTAAAATCAAAGCGCTTTTTA
GATCAAATGGAAAGCATGAAACATCTTATGGGTGAAAACAAAAGTTGA

Domains

Predicted by InterproScan.

Recombination protein O C terminal (RecO_C)

(82-237)

Recombination protein O N terminal (RecO_N)

(1-75)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recO Bacillus subtilis subsp. subtilis str. 168

100

100

1