Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGB   Type   Machinery gene
Locus tag   PPM34_RS11420 Genome accession   NZ_CP116869
Coordinates   2240710..2241747 (-) Length   345 a.a.
NCBI ID   WP_009967727.1    Uniprot ID   A0AAE2SM96
Organism   Bacillus subtilis subsp. subtilis strain MGP001     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2235710..2246747
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PPM34_RS11370 tasA 2235808..2236593 (-) 786 WP_004398632.1 biofilm matrix protein TasA -
  PPM34_RS11375 sipW 2236657..2237229 (-) 573 WP_003246088.1 signal peptidase I SipW -
  PPM34_RS11380 tapA 2237213..2237974 (-) 762 WP_004399106.1 amyloid fiber anchoring/assembly protein TapA -
  PPM34_RS11385 yqzG 2238246..2238572 (+) 327 WP_003246051.1 YqzG/YhdC family protein -
  PPM34_RS11390 spoIITA 2238614..2238793 (-) 180 WP_003230176.1 YqzE family protein -
  PPM34_RS11395 comGG 2238864..2239238 (-) 375 WP_003230170.1 ComG operon protein ComGG Machinery gene
  PPM34_RS11400 comGF 2239239..2239622 (-) 384 WP_003230168.1 ComG operon protein ComGF Machinery gene
  PPM34_RS11405 comGE 2239648..2239995 (-) 348 WP_003230165.1 ComG operon protein 5 Machinery gene
  PPM34_RS11410 comGD 2239979..2240410 (-) 432 WP_004398628.1 comG operon protein ComGD Machinery gene
  PPM34_RS11415 comGC 2240400..2240696 (-) 297 WP_003230162.1 comG operon protein ComGC Machinery gene
  PPM34_RS11420 comGB 2240710..2241747 (-) 1038 WP_009967727.1 comG operon protein ComGB Machinery gene
  PPM34_RS11425 comGA 2241734..2242804 (-) 1071 WP_004399124.1 competence protein ComGA Machinery gene
  PPM34_RS11430 corA 2243216..2244169 (-) 954 WP_004399136.1 magnesium transporter CorA -
  PPM34_RS11435 yqhB 2244312..2245640 (+) 1329 WP_009967730.1 hemolysin family protein -
  PPM34_RS11440 rsbRD 2245693..2246529 (-) 837 WP_004398754.1 RsbT co-antagonist protein RsbRD -

Sequence

Protein


Download         Length: 345 a.a.        Molecular weight: 39762.26 Da        Isoelectric Point: 9.6257

>NTDB_id=780637 PPM34_RS11420 WP_009967727.1 2240710..2241747(-) (comGB) [Bacillus subtilis subsp. subtilis strain MGP001]
MKKIRKVWLLKDQARLLKRLGEMTAGGYTLLDGLRLMELQMNKRQAADLTDSVTCLREGAPFYQVLKSLSFHKEAVGICY
FAETHGELPASMIQSGELLERKIAQADQLKRVLRYPLFLIFTVAVMFYMLQSIIIPQFSGIYQSMNMETSRSTDMLFAFF
QHIDLVIILLVLFTAGIGIYYWLVFKKKSPARQMLICIRIPLVGKLVKLFNSYFFSLQLSSLLKSGLSIYDSLNAFKHQT
FLPFYRCEAEQLIERLKAGESIESAICGSLFYETDLSKVISHGQLSGRLDRELFTYSQFILQRLEHKAQKWTGILQPMIY
GFVAAMILLVYLSMLVPMYQMMNQM

Nucleotide


Download         Length: 1038 bp        

>NTDB_id=780637 PPM34_RS11420 WP_009967727.1 2240710..2241747(-) (comGB) [Bacillus subtilis subsp. subtilis strain MGP001]
ATGAAAAAGATTAGAAAAGTCTGGTTGTTAAAGGATCAAGCCAGGTTATTAAAGAGGCTCGGTGAAATGACTGCGGGCGG
ATATACACTTCTGGATGGATTACGCCTGATGGAACTTCAGATGAATAAGAGGCAGGCGGCTGACTTGACTGATTCGGTCA
CTTGTTTGAGGGAAGGGGCTCCGTTTTATCAAGTACTAAAGAGTTTGTCATTTCATAAGGAAGCCGTAGGTATTTGTTAT
TTTGCTGAAACACATGGTGAACTGCCTGCTTCAATGATCCAGAGCGGAGAGCTGCTGGAACGAAAAATTGCACAGGCAGA
CCAGCTGAAAAGAGTGCTGCGCTATCCGCTTTTCCTCATCTTTACGGTCGCTGTCATGTTTTATATGTTACAGTCCATCA
TCATTCCTCAGTTTTCCGGTATCTATCAATCGATGAATATGGAAACCTCACGTTCAACCGATATGCTTTTTGCTTTTTTT
CAGCATATTGATCTTGTGATCATTTTGCTTGTTCTTTTTACAGCAGGTATCGGGATTTATTATTGGCTTGTGTTTAAGAA
AAAATCACCTGCCCGGCAAATGCTGATTTGTATCAGGATTCCTTTGGTTGGAAAGCTTGTAAAGCTGTTTAACAGCTACT
TTTTTTCTTTGCAGCTAAGCAGCCTTTTAAAATCAGGCCTCTCAATTTATGACAGCCTTAATGCATTTAAACATCAAACG
TTTCTCCCTTTCTACCGCTGCGAGGCTGAACAATTGATTGAACGGCTAAAAGCCGGTGAGTCAATTGAATCCGCTATTTG
TGGAAGCCTTTTTTATGAAACTGATTTATCAAAAGTCATATCTCACGGCCAGCTGAGCGGCCGATTGGATCGGGAGCTTT
TCACATACAGCCAATTCATATTACAGCGGCTGGAACACAAAGCGCAAAAATGGACAGGCATCCTTCAGCCAATGATTTAT
GGATTTGTTGCAGCGATGATCTTACTTGTGTATTTATCTATGCTTGTGCCTATGTATCAGATGATGAATCAAATGTGA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(215-337)

Type II secretion system (T2SS), protein F (T2SSF)

(17-136)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGB Bacillus subtilis subsp. subtilis str. 168

100

93.623

0.936