Detailed information    

insolico Bioinformatically predicted

Overview

Name   spo0A   Type   Regulator
Locus tag   PPM34_RS11170 Genome accession   NZ_CP116869
Coordinates   2200750..2201553 (-) Length   267 a.a.
NCBI ID   WP_003226427.1    Uniprot ID   -
Organism   Bacillus subtilis subsp. subtilis strain MGP001     
Function   activation and repression of comK; repression of rok; repression of abrB (predicted from homology)   
Competence regulation

Genomic Context

Location: 2195750..2206553
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PPM34_RS11145 glpQB 2196896..2197627 (-) 732 WP_003230288.1 glycerophosphodiester phosphodiesterase -
  PPM34_RS11150 yqiI 2197706..2198326 (-) 621 WP_010886565.1 N-acetylmuramoyl-L-alanine amidase family protein -
  PPM34_RS11155 yqiH 2198341..2198634 (-) 294 WP_003230284.1 lipoprotein -
  PPM34_RS11160 - 2198942..2199094 (+) 153 WP_003230276.1 hypothetical protein -
  PPM34_RS11165 yqiG 2199167..2200285 (+) 1119 WP_004398691.1 NADH-dependent flavin oxidoreductase -
  PPM34_RS11170 spo0A 2200750..2201553 (-) 804 WP_003226427.1 sporulation transcription factor Spo0A Regulator
  PPM34_RS11175 spoIVB 2201829..2203109 (-) 1281 WP_004398697.1 SpoIVB peptidase -
  PPM34_RS11180 recN 2203284..2205014 (-) 1731 WP_003230267.1 DNA repair protein RecN Machinery gene
  PPM34_RS11185 argR 2205051..2205500 (-) 450 WP_003230265.1 arginine repressor ArgR -
  PPM34_RS11190 yqxC 2205598..2206443 (-) 846 WP_003230264.1 TlyA family RNA methyltransferase -

Sequence

Protein


Download         Length: 267 a.a.        Molecular weight: 29691.19 Da        Isoelectric Point: 6.3913

>NTDB_id=780628 PPM34_RS11170 WP_003226427.1 2200750..2201553(-) (spo0A) [Bacillus subtilis subsp. subtilis strain MGP001]
MEKIKVCVADDNRELVSLLSEYIEGQEDMEVIGVAYNGQECLSLFKEKDPDVLVLDIIMPHLDGLAVLERLRESDLKKQP
NVIMLTAFGQEDVTKKAVDLGASYFILKPFDMENLVGHIRQVSGNASSVTHRAPSSQSSIIRSSQPEPKKKNLDASITSI
IHEIGVPAHIKGYLYLREAISMVYNDIELLGSITKVLYPDIAKKFNTTASRVERAIRHAIEVAWSRGNIDSISSLFGYTV
SMTKAKPTNSEFIAMVADKLRLEHKAS

Nucleotide


Download         Length: 804 bp        

>NTDB_id=780628 PPM34_RS11170 WP_003226427.1 2200750..2201553(-) (spo0A) [Bacillus subtilis subsp. subtilis strain MGP001]
GTGGAGAAAATTAAAGTTTGTGTTGCTGATGATAATCGAGAGCTGGTAAGCCTGTTAAGTGAATATATAGAAGGACAGGA
AGACATGGAAGTGATCGGCGTTGCTTATAACGGACAGGAATGCCTGTCGCTGTTTAAAGAAAAAGATCCCGATGTGCTCG
TATTAGATATTATTATGCCGCATCTAGACGGACTTGCGGTTTTAGAGAGGCTGAGGGAATCAGATCTGAAAAAACAGCCG
AATGTCATTATGCTGACAGCCTTTGGGCAGGAAGATGTCACGAAAAAGGCCGTCGATTTAGGCGCGTCCTACTTTATTCT
CAAACCGTTTGATATGGAAAACCTTGTCGGCCATATCCGCCAGGTCAGCGGAAATGCCAGCAGTGTGACGCATCGTGCGC
CATCATCGCAAAGCAGTATTATACGCAGCAGCCAGCCTGAACCAAAGAAGAAAAATCTCGACGCGAGCATCACAAGCATT
ATCCATGAAATCGGCGTCCCAGCCCATATTAAAGGCTATCTCTATCTGCGCGAAGCAATCTCAATGGTATACAATGACAT
CGAATTGCTCGGCAGCATTACAAAAGTCCTCTATCCGGACATCGCCAAAAAATTTAACACAACCGCAAGCCGTGTAGAAA
GAGCGATCCGCCATGCAATTGAAGTGGCATGGAGCAGAGGAAACATTGATTCCATTTCCTCGTTGTTTGGTTATACTGTC
AGCATGACAAAAGCTAAACCTACCAACAGTGAATTCATTGCAATGGTTGCGGATAAGCTGAGGTTAGAGCATAAGGCTTC
TTAA

Domains

Predicted by InterproScan.

Sporulation initiation factor Spo0A C terminal (Spo0A_C)

(157-260)

Response regulator receiver domain (Response_reg)

(6-119)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  spo0A Bacillus subtilis subsp. subtilis str. 168

100

100

1