Detailed information    

insolico Bioinformatically predicted

Overview

Name   recU   Type   Machinery gene
Locus tag   PPM34_RS10185 Genome accession   NZ_CP116869
Coordinates   2023531..2024151 (+) Length   206 a.a.
NCBI ID   WP_004399067.1    Uniprot ID   -
Organism   Bacillus subtilis subsp. subtilis strain MGP001     
Function   plasmid transformation; homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2018531..2029151
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PPM34_RS10145 ptsA 2019662..2020168 (-) 507 WP_009967573.1 PTS sugar transporter subunit IIA -
  PPM34_RS10150 ypqA 2020306..2020725 (+) 420 WP_004398640.1 Hsp20/alpha crystallin family protein -
  PPM34_RS10155 sppG 2020746..2021123 (-) 378 WP_004398696.1 YppG family protein -
  PPM34_RS10160 yppF 2021311..2021499 (+) 189 WP_003230690.1 YppF family protein -
  PPM34_RS10165 yppE 2021538..2021909 (-) 372 WP_003246080.1 YppE family protein -
  PPM34_RS10170 yppD 2021955..2022200 (-) 246 WP_004398488.1 YppD family protein -
  PPM34_RS10175 sspM 2022399..2022503 (+) 105 WP_003225606.1 acid-soluble spore protein SspM -
  PPM34_RS10180 yppC 2022528..2023490 (-) 963 WP_004398707.1 DUF2515 domain-containing protein -
  PPM34_RS10185 recU 2023531..2024151 (+) 621 WP_004399067.1 Holliday junction resolvase RecU Machinery gene
  PPM34_RS10190 ponA 2024173..2026917 (+) 2745 WP_004398589.1 transglycosylase domain-containing protein -
  PPM34_RS10195 ypoC 2026993..2027487 (-) 495 WP_009967579.1 YpoC family protein -
  PPM34_RS10200 nth 2027484..2028143 (-) 660 WP_009967580.1 endonuclease III -
  PPM34_RS10205 dnaD 2028162..2028860 (-) 699 WP_004398499.1 DNA replication protein DnaD -

Sequence

Protein


Download         Length: 206 a.a.        Molecular weight: 23959.09 Da        Isoelectric Point: 9.6240

>NTDB_id=780627 PPM34_RS10185 WP_004399067.1 2023531..2024151(+) (recU) [Bacillus subtilis subsp. subtilis strain MGP001]
MIRYPNGKTFQPKHSVSSQNSQKRAPSYSNRGMTLEDDLNETNKYYLTNQIAVIHKKPTPVQIVNVHYPKRSAAVIKEAY
FKQSSTTDYNGIYKGRYIDFEAKETKNKTSFPLQNFHDHQIEHMKQVKAQDGICFVIISAFDQVYFLEADKLFYFWDRKE
KNGRKSIRKDELEETAYPISLGYAPRIDYISIIEQLYFSPSSGAKG

Nucleotide


Download         Length: 621 bp        

>NTDB_id=780627 PPM34_RS10185 WP_004399067.1 2023531..2024151(+) (recU) [Bacillus subtilis subsp. subtilis strain MGP001]
GTGATTCGGTATCCTAATGGAAAAACATTTCAGCCGAAACATTCGGTTTCATCCCAAAACAGTCAGAAAAGGGCCCCGTC
TTACAGTAATCGCGGAATGACCCTCGAAGATGACTTAAACGAAACGAATAAGTATTATCTGACAAACCAAATTGCCGTTA
TACACAAAAAGCCGACACCTGTTCAAATTGTAAATGTCCATTATCCAAAAAGAAGTGCCGCAGTGATTAAAGAAGCTTAC
TTTAAACAATCATCGACAACAGACTACAATGGGATTTACAAAGGGCGGTATATTGATTTTGAGGCGAAAGAAACGAAAAA
CAAGACCTCTTTCCCCCTGCAGAATTTTCATGACCATCAAATCGAGCATATGAAGCAGGTAAAGGCTCAAGACGGTATTT
GTTTTGTTATTATATCCGCTTTCGACCAGGTTTATTTTTTGGAAGCCGATAAGCTGTTTTATTTCTGGGACAGAAAAGAA
AAAAACGGCAGAAAATCAATTCGAAAAGATGAGTTGGAAGAAACAGCTTATCCGATTTCTCTTGGATACGCACCCAGAAT
TGATTATATTAGTATTATTGAACAGCTTTATTTTTCGCCATCATCTGGTGCGAAAGGTTGA

Domains

Predicted by InterproScan.

Recombination protein U (RecU)

(31-193)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recU Bacillus subtilis subsp. subtilis str. 168

100

100

1