Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   PPM34_RS06985 Genome accession   NZ_CP116869
Coordinates   1334995..1335273 (+) Length   92 a.a.
NCBI ID   WP_003244728.1    Uniprot ID   A0A199WGU6
Organism   Bacillus subtilis subsp. subtilis strain MGP001     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 1329995..1340273
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PPM34_RS06965 panEB 1331182..1332093 (+) 912 WP_003245639.1 ketopantoate reductase family protein -
  PPM34_RS06970 ampS 1332127..1333359 (-) 1233 WP_003232341.1 aminopeptidase -
  PPM34_RS06975 ykpC 1333469..1333603 (-) 135 WP_003238865.1 protein YkpC -
  PPM34_RS06980 mreBH 1333704..1334711 (-) 1008 WP_003245743.1 cell shape-determining protein MreBH -
  PPM34_RS06985 abrB 1334995..1335273 (+) 279 WP_003244728.1 transcriptional regulator AbhA Regulator
  PPM34_RS06990 kinC 1335463..1336749 (+) 1287 WP_003232333.1 two-component sensor histidine kinase KinC -
  PPM34_RS06995 ykqA 1336765..1337598 (+) 834 WP_003245146.1 gamma-glutamylcyclotransferase -
  PPM34_RS07000 ktrC 1337661..1338326 (+) 666 WP_003222311.1 Ktr system potassium transporter KtrC -
  PPM34_RS07005 ade 1338481..1340214 (+) 1734 WP_003245362.1 adenine deaminase -

Sequence

Protein


Download         Length: 92 a.a.        Molecular weight: 10256.07 Da        Isoelectric Point: 5.8808

>NTDB_id=780622 PPM34_RS06985 WP_003244728.1 1334995..1335273(+) (abrB) [Bacillus subtilis subsp. subtilis strain MGP001]
MKSIGVVRKVDELGRIVMPIELRRALDIAIKDSIEFFVDGDKIILKKYKPHGVCLMTGEITSENKEYGNGKITLSPEGAQ
LLLEEIQAALKE

Nucleotide


Download         Length: 279 bp        

>NTDB_id=780622 PPM34_RS06985 WP_003244728.1 1334995..1335273(+) (abrB) [Bacillus subtilis subsp. subtilis strain MGP001]
ATGAAATCAATAGGTGTTGTGAGAAAAGTAGATGAATTAGGCCGCATTGTCATGCCGATTGAGTTGAGACGGGCATTGGA
TATTGCCATAAAAGACAGCATTGAGTTTTTTGTTGACGGAGATAAAATTATCTTGAAAAAGTACAAACCTCATGGCGTTT
GTTTAATGACTGGAGAAATCACTTCAGAAAATAAAGAATACGGCAACGGTAAAATTACGCTAAGCCCTGAGGGTGCACAG
CTGCTTCTCGAAGAAATTCAAGCCGCTTTAAAAGAATAA

Domains

Predicted by InterproScan.

AbrB C-terminal domain (AbrB_C)

(53-88)

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(8-51)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A199WGU6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

58.242

98.913

0.576