Detailed information    

insolico Bioinformatically predicted

Overview

Name   rok   Type   Regulator
Locus tag   PPM34_RS06865 Genome accession   NZ_CP116869
Coordinates   1310917..1311492 (+) Length   191 a.a.
NCBI ID   WP_003232378.1    Uniprot ID   -
Organism   Bacillus subtilis subsp. subtilis strain MGP001     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 1305917..1316492
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PPM34_RS06835 dapD 1306103..1306813 (+) 711 WP_003218680.1 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-acetyltransferase -
  PPM34_RS06840 dapI 1306883..1308007 (+) 1125 WP_003232383.1 N-acetyldiaminopimelate deacetylase -
  PPM34_RS06845 ykuS 1308069..1308314 (+) 246 WP_003232382.1 YkuS family protein -
  PPM34_RS06850 mscT 1308351..1309154 (-) 804 WP_003244994.1 small-conductance mechanosensitive channel protein MscT -
  PPM34_RS06855 ahpA 1309391..1309933 (+) 543 WP_003245371.1 biofilm-specific peroxidase AhpA -
  PPM34_RS06860 ykuV 1310005..1310451 (+) 447 WP_003245810.1 thiol-disulfide oxidoreductase YkuV -
  PPM34_RS06865 rok 1310917..1311492 (+) 576 WP_003232378.1 transcriptional regulator Rok Regulator
  PPM34_RS06870 cse15 1311533..1312498 (-) 966 WP_003245018.1 spore protein Cse15 -
  PPM34_RS06875 mobA 1312635..1313234 (+) 600 WP_003232376.1 molybdenum cofactor guanylyltransferase -
  PPM34_RS06880 moeB 1313285..1314304 (+) 1020 WP_003232375.1 molybdopterin-synthase adenylyltransferase MoeB -
  PPM34_RS06885 glp 1314322..1315614 (+) 1293 WP_003232372.1 gephyrin-like molybdotransferase Glp -
  PPM34_RS06890 mobB 1315575..1316096 (+) 522 WP_003232370.1 molybdopterin-guanine dinucleotide biosynthesis protein B -

Sequence

Protein


Download         Length: 191 a.a.        Molecular weight: 21839.85 Da        Isoelectric Point: 9.8633

>NTDB_id=780621 PPM34_RS06865 WP_003232378.1 1310917..1311492(+) (rok) [Bacillus subtilis subsp. subtilis strain MGP001]
MFNEREALRLRLEQLNEAEVKVIREYQIERDKIYAKLRELDRNGSPSEIKKDFRSEKKPDSLPVLAELAAQEIRSYQPQS
QQQSVQPQLQSISSLPAGIPDGTTRRRRGTARPGSKAAKLREAAIKTLKRHNAAIKSSELQKEIEKESGLEIPNMTTFMQ
SLIKMYPEVKKPYRGQYILEGEIESAESANE

Nucleotide


Download         Length: 576 bp        

>NTDB_id=780621 PPM34_RS06865 WP_003232378.1 1310917..1311492(+) (rok) [Bacillus subtilis subsp. subtilis strain MGP001]
ATGTTTAATGAAAGAGAAGCTTTGCGCTTGCGGTTAGAACAATTAAATGAAGCTGAAGTGAAAGTCATTCGTGAATATCA
AATTGAACGTGATAAAATATACGCAAAATTAAGAGAGCTGGACAGAAATGGAAGCCCTTCCGAAATCAAAAAGGATTTCC
GTTCTGAAAAAAAACCTGACTCTCTGCCGGTTCTCGCTGAGCTTGCGGCTCAGGAAATCAGAAGCTATCAGCCGCAATCA
CAGCAGCAGTCTGTTCAGCCTCAGCTTCAATCTATTTCCTCTCTTCCTGCCGGTATACCAGACGGAACAACACGAAGAAG
AAGAGGAACGGCAAGACCGGGATCAAAAGCAGCTAAGCTGCGTGAAGCTGCTATTAAAACATTAAAACGCCACAACGCGG
CGATTAAGAGCTCGGAGCTTCAAAAAGAGATTGAAAAAGAAAGCGGTCTTGAAATCCCTAATATGACAACGTTTATGCAA
AGCTTAATTAAAATGTACCCGGAAGTGAAAAAGCCATATCGCGGGCAGTACATTTTAGAGGGTGAAATCGAATCTGCAGA
ATCAGCAAACGAATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rok Bacillus subtilis subsp. subtilis str. 168

100

100

1