Detailed information    

insolico Bioinformatically predicted

Overview

Name   kre   Type   Regulator
Locus tag   PPM34_RS06750 Genome accession   NZ_CP116869
Coordinates   1291690..1292154 (-) Length   154 a.a.
NCBI ID   WP_003232406.1    Uniprot ID   G4NVM0
Organism   Bacillus subtilis subsp. subtilis strain MGP001     
Function   regulation of regulators (predicted from homology)   
Competence regulation

Genomic Context

Location: 1286690..1297154
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PPM34_RS06730 kinA 1287156..1288976 (+) 1821 WP_003245779.1 sporulation histidine kinase KinA -
  PPM34_RS06735 dapX 1288987..1290168 (-) 1182 WP_003232415.1 aminotransferase A -
  PPM34_RS06740 - 1290370..1290531 (-) 162 WP_003245246.1 hypothetical protein -
  PPM34_RS06745 cheV 1290735..1291646 (+) 912 WP_009967126.1 chemotaxis protein CheV -
  PPM34_RS06750 kre 1291690..1292154 (-) 465 WP_003232406.1 YkyB family protein Regulator
  PPM34_RS06755 ykuC 1292280..1293572 (-) 1293 WP_003245267.1 MFS transporter -
  PPM34_RS06760 ltdD 1293648..1294142 (-) 495 WP_010886500.1 L,D-transpeptidase family protein -
  PPM34_RS06765 ppeE 1294199..1295059 (-) 861 WP_003232400.1 metallophosphoesterase -
  PPM34_RS06770 fadH 1295202..1295966 (+) 765 WP_003232398.1 2,4-dienoyl-CoA reductase -

Sequence

Protein


Download         Length: 154 a.a.        Molecular weight: 17895.71 Da        Isoelectric Point: 10.3545

>NTDB_id=780620 PPM34_RS06750 WP_003232406.1 1291690..1292154(-) (kre) [Bacillus subtilis subsp. subtilis strain MGP001]
MDDHAYTKDLQPTVENLSKAVYTVNRHAKTAPNPKYLYLLKKRALQKLVKEGKGKKIGLHFSKNPRFSQQQSDVLISIGD
YYFHMPPTKEDFEHLPHLGTLNQSYRNPKAQMSLTKAKHLLQEYVGMKEKPLVPNRQQPAYHKPVFKKLGESYF

Nucleotide


Download         Length: 465 bp        

>NTDB_id=780620 PPM34_RS06750 WP_003232406.1 1291690..1292154(-) (kre) [Bacillus subtilis subsp. subtilis strain MGP001]
ATGGACGACCATGCATATACGAAAGATCTGCAGCCAACCGTAGAAAATCTTTCAAAAGCAGTTTACACTGTGAACCGCCA
TGCAAAAACCGCCCCCAACCCTAAATACCTATATCTGCTGAAAAAACGGGCTTTGCAAAAGCTTGTCAAAGAAGGTAAAG
GAAAGAAAATAGGGCTTCATTTTTCAAAAAATCCAAGGTTCAGCCAACAGCAATCGGACGTGCTTATCTCAATCGGAGAC
TACTATTTTCACATGCCTCCAACTAAAGAAGACTTCGAACATCTTCCGCATTTAGGTACACTTAATCAATCGTATCGAAA
TCCTAAAGCTCAAATGTCTTTAACAAAAGCGAAACACCTATTGCAAGAATATGTCGGCATGAAAGAAAAGCCGCTAGTGC
CAAATCGCCAGCAGCCAGCTTACCATAAACCGGTCTTTAAAAAACTTGGCGAGAGTTACTTTTAA

Domains

Predicted by InterproScan.

YkyB-like protein (YkyB)

(14-128)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G4NVM0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  kre Bacillus subtilis subsp. subtilis str. 168

100

100

1