Detailed information    

insolico Bioinformatically predicted

Overview

Name   med   Type   Regulator
Locus tag   PPM34_RS05490 Genome accession   NZ_CP116869
Coordinates   1057970..1058923 (+) Length   317 a.a.
NCBI ID   WP_003245494.1    Uniprot ID   A0AAE2SG99
Organism   Bacillus subtilis subsp. subtilis strain MGP001     
Function   regulation of regulators (predicted from homology)   
Competence regulation

Genomic Context

Location: 1052970..1063923
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PPM34_RS05465 argF 1054802..1055761 (+) 960 WP_003232980.1 ornithine carbamoyltransferase -
  PPM34_RS05470 yjzC 1055847..1056026 (+) 180 WP_003245356.1 YjzC family protein -
  PPM34_RS05475 yjzD 1056072..1056257 (-) 186 WP_003245236.1 YjzD family protein -
  PPM34_RS05480 - 1056506..1057240 (+) 735 WP_003245223.1 hypothetical protein -
  PPM34_RS05485 - 1057322..1057879 (+) 558 WP_003232974.1 hypothetical protein -
  PPM34_RS05490 med 1057970..1058923 (+) 954 WP_003245494.1 transcriptional regulator Med Regulator
  PPM34_RS05495 comZ 1058938..1059129 (+) 192 WP_003224559.1 ComG operon transcriptional repressor ComZ Regulator
  PPM34_RS05500 yjzB 1059159..1059398 (-) 240 WP_003232972.1 spore coat protein YjzB -
  PPM34_RS05505 fabH 1059563..1060501 (+) 939 WP_003232971.1 beta-ketoacyl-ACP synthase III -
  PPM34_RS05510 fabF 1060524..1061765 (+) 1242 WP_003244890.1 beta-ketoacyl-ACP synthase II -
  PPM34_RS05515 yjaZ 1061841..1062626 (+) 786 WP_003232967.1 DUF2268 domain-containing protein -
  PPM34_RS05520 appD 1062818..1063804 (+) 987 WP_003232965.1 oligopeptide ABC transporter ATP-binding protein AppD -

Sequence

Protein


Download         Length: 317 a.a.        Molecular weight: 35310.80 Da        Isoelectric Point: 4.5457

>NTDB_id=780611 PPM34_RS05490 WP_003245494.1 1057970..1058923(+) (med) [Bacillus subtilis subsp. subtilis strain MGP001]
MITRLVMIFSVLLLLSGCGQTPFKGKIEKVGMLFPDTINDLVWGTKGYKGLLNIQSKYNVDVYYKEGVKTEEDIINAIED
FHKRGVNLLYGHGSEYAEVFNLVGEDYPDMEFVISNAKAKADNVTSVHFSGEAMGFFGGMTAAHMSKTNQVGVIASFTWQ
PEVDGFIKGAKYENPDIEVNTKYTDHWDDDTTAVKLYQKMKNEGADVVYPAGDGYNVPVIQQIKKDGLYAIGYVTDQSDL
GENTVLTSTVQNVDKAYEIIAEQFNKGTLEGGDHYYDLNTGVVEMGTFSPLVDQDFQQRIAKLIKTYNKTGELPKNE

Nucleotide


Download         Length: 954 bp        

>NTDB_id=780611 PPM34_RS05490 WP_003245494.1 1057970..1058923(+) (med) [Bacillus subtilis subsp. subtilis strain MGP001]
TTGATCACAAGGCTTGTCATGATCTTTTCTGTCCTCCTTTTATTGAGTGGATGTGGACAAACTCCGTTCAAAGGAAAAAT
TGAGAAGGTCGGCATGCTCTTTCCTGATACGATTAATGACCTCGTATGGGGCACAAAAGGGTATAAAGGATTACTGAATA
TACAATCCAAATACAATGTGGACGTCTATTATAAAGAAGGCGTTAAAACAGAAGAAGATATCATAAATGCGATTGAGGAT
TTTCATAAGAGGGGCGTCAATCTGCTCTACGGCCATGGGAGTGAATATGCTGAGGTGTTTAACTTGGTCGGCGAAGATTA
TCCAGATATGGAATTCGTCATTTCCAATGCGAAAGCGAAAGCTGATAATGTAACAAGTGTCCATTTTAGCGGGGAAGCAA
TGGGCTTTTTTGGAGGAATGACTGCTGCCCATATGTCGAAAACGAATCAGGTCGGTGTAATTGCTTCCTTTACGTGGCAG
CCTGAGGTTGACGGTTTTATCAAAGGGGCCAAGTATGAAAATCCGGATATAGAGGTAAATACGAAATATACGGATCATTG
GGATGATGATACAACAGCAGTAAAGCTTTATCAGAAAATGAAGAACGAAGGCGCGGATGTTGTGTATCCCGCCGGAGACG
GGTATAATGTTCCTGTTATTCAGCAAATCAAAAAAGACGGTCTTTATGCCATAGGCTACGTCACAGATCAATCGGATCTG
GGCGAGAATACCGTATTAACCAGCACGGTGCAAAATGTGGACAAGGCCTATGAAATCATTGCTGAACAATTTAATAAAGG
CACCCTTGAGGGCGGCGATCATTACTACGACCTGAACACGGGAGTCGTTGAGATGGGAACATTCAGCCCGCTCGTCGATC
AAGACTTTCAGCAAAGAATCGCCAAGCTGATCAAAACATACAACAAAACAGGCGAGCTGCCAAAAAACGAGTAA

Domains

Predicted by InterproScan.

ABC transporter substrate-binding protein PnrA-like (Bmp)

(27-317)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  med Bacillus subtilis subsp. subtilis str. 168

100

100

1