Detailed information    

insolico Bioinformatically predicted

Overview

Name   comK   Type   Regulator
Locus tag   PPM34_RS05035 Genome accession   NZ_CP116869
Coordinates   968456..969034 (+) Length   192 a.a.
NCBI ID   WP_003245329.1    Uniprot ID   A0A809FND1
Organism   Bacillus subtilis subsp. subtilis strain MGP001     
Function   activate transcription of late competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 963456..974034
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PPM34_RS19880 - 963967..964482 (-) 516 WP_326255844.1 methyl-accepting chemotaxis protein -
  PPM34_RS19885 - 964771..965349 (-) 579 Protein_919 protoglobin domain-containing protein -
  PPM34_RS05020 comW 965404..966933 (-) 1530 WP_003245031.1 FAD-dependent oxidoreductase -
  PPM34_RS05025 yhxC 967045..967902 (+) 858 WP_003245662.1 SDR family oxidoreductase -
  PPM34_RS05030 yhzC 967930..968163 (-) 234 WP_003233142.1 IDEAL domain-containing protein -
  PPM34_RS05035 comK 968456..969034 (+) 579 WP_003245329.1 competence transcription factor ComK Regulator
  PPM34_RS05040 yhxD 969081..969980 (-) 900 WP_003245421.1 SDR family oxidoreductase -
  PPM34_RS05045 yhjA 970197..970466 (+) 270 WP_003233136.1 excalibur calcium-binding domain-containing protein -
  PPM34_RS05050 yhjB 970509..971978 (-) 1470 WP_003233134.1 sodium:solute symporter family protein -
  PPM34_RS05055 yhjC 971975..972175 (-) 201 WP_003224377.1 DUF3311 domain-containing protein -
  PPM34_RS05060 - 972383..972745 (-) 363 WP_003233132.1 hypothetical protein -
  PPM34_RS05065 yhjE 972897..973520 (+) 624 WP_010886465.1 TVP38/TMEM64 family protein -
  PPM34_RS05070 lepB 973522..974028 (+) 507 WP_003233128.1 signal peptidase I -

Sequence

Protein


Download         Length: 192 a.a.        Molecular weight: 22429.68 Da        Isoelectric Point: 7.7153

>NTDB_id=780608 PPM34_RS05035 WP_003245329.1 968456..969034(+) (comK) [Bacillus subtilis subsp. subtilis strain MGP001]
MSQKTDAPLESYEVNGATIAVLPEEIDGKICSKIIEKDCVFYVNMKPLQIVDRSCRFFGSSYAGRKAGTYEVTKISHKPP
IMVDPSNQIFLFPTLSSTRPQCGWISHVHVKEFKATEFDDTEVTFSNGKTMELPISYNSFENQVYRTAWLRTKFQDRIDH
RVPKRQEFMLYPKEERTKMIYDFILRELGERY

Nucleotide


Download         Length: 579 bp        

>NTDB_id=780608 PPM34_RS05035 WP_003245329.1 968456..969034(+) (comK) [Bacillus subtilis subsp. subtilis strain MGP001]
ATGAGTCAGAAAACAGACGCACCTTTAGAATCGTATGAAGTGAACGGCGCAACAATTGCCGTGCTGCCAGAAGAAATAGA
CGGCAAAATCTGTTCCAAAATTATTGAAAAAGATTGCGTGTTTTATGTAAACATGAAGCCGCTGCAAATTGTCGACAGAA
GCTGCCGATTTTTTGGATCAAGCTATGCGGGAAGAAAAGCAGGAACTTATGAAGTGACAAAAATTTCACACAAGCCGCCG
ATCATGGTGGACCCTTCGAACCAAATCTTTTTATTCCCTACACTTTCTTCGACAAGACCCCAATGCGGCTGGATTTCCCA
TGTGCATGTAAAAGAATTCAAAGCGACTGAATTCGACGATACGGAAGTGACGTTTTCCAATGGGAAAACGATGGAGCTGC
CGATCTCTTATAATTCGTTCGAGAACCAGGTATACCGAACAGCGTGGCTCAGAACCAAATTCCAAGACAGAATCGACCAC
CGCGTGCCGAAAAGACAGGAATTTATGCTGTACCCGAAAGAAGAGCGGACGAAGATGATTTATGATTTTATTTTGCGTGA
GCTCGGGGAACGGTATTAG

Domains

Predicted by InterproScan.

ComK protein (ComK)

(10-158)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A809FND1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comK Bacillus subtilis subsp. subtilis str. 168

100

100

1