Detailed information    

insolico Bioinformatically predicted

Overview

Name   recX   Type   Regulator
Locus tag   PPM34_RS03970 Genome accession   NZ_CP116869
Coordinates   776980..777774 (+) Length   264 a.a.
NCBI ID   WP_003243354.1    Uniprot ID   A0AAE2SGN5
Organism   Bacillus subtilis subsp. subtilis strain MGP001     
Function   inhibit excessive RecA-mediated recombination (predicted from homology)   
Competence regulation

Genomic Context

Location: 771980..782774
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PPM34_RS03940 sxzA 772819..773850 (+) 1032 WP_003243057.1 FecCD family ABC transporter permease -
  PPM34_RS03945 yfhB 773965..774846 (+) 882 WP_003242763.1 PhzF family phenazine biosynthesis protein -
  PPM34_RS03950 yfhC 774934..775518 (+) 585 WP_003243940.1 nitroreductase family protein -
  PPM34_RS03955 yfhD 775557..775748 (-) 192 WP_003233561.1 YfhD family protein -
  PPM34_RS03960 yfhE 775815..775925 (-) 111 WP_003223230.1 YfhE family protein -
  PPM34_RS03965 yfhF 775980..776891 (-) 912 WP_003244332.1 TIGR01777 family oxidoreductase -
  PPM34_RS03970 recX 776980..777774 (+) 795 WP_003243354.1 recombination regulator RecX Regulator
  PPM34_RS03975 yfhH 777776..778090 (+) 315 WP_003244592.1 YfhH family protein -
  PPM34_RS03980 yfhI 778233..779426 (+) 1194 WP_003243500.1 MFS transporter -
  PPM34_RS03985 sspK 779459..779611 (-) 153 WP_003223241.1 small, acid-soluble spore protein K -
  PPM34_RS03990 yfhJ 779736..780005 (+) 270 WP_003243789.1 YfhJ family protein -
  PPM34_RS03995 yfhK 780150..780668 (+) 519 WP_003243363.1 SH3 domain-containing protein -
  PPM34_RS04000 spdL 780753..781085 (+) 333 WP_003242803.1 SdpC immunity protein SpdL -
  PPM34_RS04005 ephM 781072..781932 (+) 861 WP_003243419.1 epoxide hydrolase EphM -

Sequence

Protein


Download         Length: 264 a.a.        Molecular weight: 31013.23 Da        Isoelectric Point: 6.6686

>NTDB_id=780603 PPM34_RS03970 WP_003243354.1 776980..777774(+) (recX) [Bacillus subtilis subsp. subtilis strain MGP001]
MPFITKISTQKKNTERFNIFLDDKYAFSVDADVLVKFELKKGKELDDLDIIEIQYGDEVKKGFNRALDFLSYRMRSTKEV
EDHLKKKETSPPVIAEVIHRLNDYKYLNDQEFAAAYVSTHKKTNGKGPDVLFRELRAKGIDDDTIKEALSSFSFEDQTRE
AVKHVEKLLKKDKKLSTKELKQRAQLQLQRKGFSFDVISAAMDQIEYENDEDTEKEALRLHAEKAFRKYRYDGSYESAMK
VKQFLFRKGFSLDLIEQLLQEEEY

Nucleotide


Download         Length: 795 bp        

>NTDB_id=780603 PPM34_RS03970 WP_003243354.1 776980..777774(+) (recX) [Bacillus subtilis subsp. subtilis strain MGP001]
ATGCCGTTTATTACAAAAATATCAACGCAAAAAAAGAATACGGAACGCTTCAATATTTTTCTGGATGATAAATACGCCTT
CAGCGTGGACGCGGATGTGCTCGTGAAATTTGAGCTCAAGAAGGGAAAAGAACTCGATGATCTTGACATCATTGAGATTC
AATACGGCGATGAAGTGAAGAAAGGCTTCAACCGTGCGCTTGACTTTTTATCCTATCGAATGCGGTCGACGAAAGAGGTC
GAGGATCACTTAAAGAAAAAAGAAACCTCGCCCCCCGTCATTGCGGAAGTCATCCATAGGCTTAACGATTACAAGTACTT
AAACGACCAGGAATTTGCCGCAGCCTATGTCAGCACTCACAAAAAAACAAACGGAAAAGGCCCTGATGTTTTGTTCAGAG
AGCTAAGAGCGAAGGGAATTGATGACGATACAATTAAGGAGGCGCTAAGTTCCTTTTCCTTTGAAGATCAGACAAGAGAA
GCGGTCAAGCATGTTGAAAAGCTTCTCAAAAAAGATAAAAAGCTTTCGACGAAAGAACTCAAACAGCGCGCCCAGCTGCA
GCTTCAGCGCAAGGGCTTCTCATTTGATGTTATCAGCGCGGCGATGGATCAGATTGAATATGAAAATGATGAAGACACAG
AGAAAGAAGCGCTGCGCCTTCACGCGGAAAAAGCGTTTAGAAAATACCGCTATGACGGCTCATATGAAAGCGCCATGAAG
GTCAAACAATTTTTATTCCGCAAAGGATTCTCACTCGATTTAATCGAGCAATTACTGCAGGAAGAGGAGTACTGA

Domains

Predicted by InterproScan.

RecX family (RecX_HTH2)

(84-204)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recX Bacillus subtilis subsp. subtilis str. 168

100

100

1