Detailed information    

insolico Bioinformatically predicted

Overview

Name   nucA/comI   Type   Machinery gene
Locus tag   PPM34_RS01355 Genome accession   NZ_CP116869
Coordinates   244010..244459 (-) Length   149 a.a.
NCBI ID   WP_003246436.1    Uniprot ID   A0AAE2SFQ0
Organism   Bacillus subtilis subsp. subtilis strain MGP001     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 239010..249459
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PPM34_RS01320 yckA 239161..239841 (-) 681 WP_003234624.1 amino acid ABC transporter permease -
  PPM34_RS01325 yckB 239851..240714 (-) 864 WP_009966510.1 transporter substrate-binding domain-containing protein -
  PPM34_RS01330 - 240876..241073 (+) 198 WP_119122841.1 hypothetical protein -
  PPM34_RS01335 yckC 241092..241547 (+) 456 WP_003246356.1 RDD family protein -
  PPM34_RS01340 yckD 241629..241961 (+) 333 WP_003246247.1 YckD family protein -
  PPM34_RS01345 bglC 242115..243548 (+) 1434 WP_003246242.1 6-phospho-beta-glucosidase -
  PPM34_RS01350 nin/comJ 243585..243983 (-) 399 WP_003246342.1 DNA-entry nuclease inhibitor Regulator
  PPM34_RS01355 nucA/comI 244010..244459 (-) 450 WP_003246436.1 DNA-entry nuclease Machinery gene
  PPM34_RS01360 tlpC 244627..246348 (-) 1722 WP_003246498.1 methyl-accepting chemotaxis protein TlpC -
  PPM34_RS01365 hxlB 246459..247016 (-) 558 WP_003246343.1 6-phospho-3-hexuloisomerase -
  PPM34_RS01370 hxlA 247022..247654 (-) 633 WP_003246452.1 3-hexulose-6-phosphate synthase -
  PPM34_RS01375 hxlR 247888..248250 (+) 363 WP_003246265.1 transcriptional activator HxlR -

Sequence

Protein


Download         Length: 149 a.a.        Molecular weight: 16486.48 Da        Isoelectric Point: 4.6274

>NTDB_id=780593 PPM34_RS01355 WP_003246436.1 244010..244459(-) (nucA/comI) [Bacillus subtilis subsp. subtilis strain MGP001]
MNITTDIIKTILLVIVIIAAAAVGLIKGDFFSADQKTSQTKEYDETMAFPSDRYPETAKHIKDAINEGHSEVCTIDRDGA
EERREQSLKDVPSKKGYDRDEWPMAMCKEGGEGASVEYISPADNRGAGSWVGHRLTDYPDGTKVLFTIQ

Nucleotide


Download         Length: 450 bp        

>NTDB_id=780593 PPM34_RS01355 WP_003246436.1 244010..244459(-) (nucA/comI) [Bacillus subtilis subsp. subtilis strain MGP001]
GTGAACATCACGACGGACATCATAAAAACGATACTTCTCGTCATCGTCATCATAGCAGCTGCAGCTGTCGGCCTGATAAA
AGGAGACTTTTTCTCAGCTGATCAAAAAACGTCTCAAACGAAAGAATATGATGAAACAATGGCCTTCCCATCTGACCGGT
ATCCCGAAACTGCCAAGCATATTAAGGATGCGATAAATGAGGGGCACTCAGAGGTGTGCACTATTGACAGAGACGGAGCT
GAAGAACGCCGCGAGCAATCATTAAAGGACGTACCTTCCAAAAAGGGGTATGACAGAGATGAATGGCCAATGGCCATGTG
CAAAGAAGGCGGTGAGGGAGCTTCTGTAGAATACATTTCTCCCGCTGACAACCGCGGAGCAGGCTCTTGGGTCGGGCATC
GGCTTACCGATTACCCAGACGGCACAAAGGTTTTATTCACAATTCAGTAA

Domains

Predicted by InterproScan.

Deoxyribonuclease NucA/NucB (DNase_NucA_NucB)

(53-148)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  nucA/comI Bacillus subtilis subsp. subtilis str. 168

100

100

1