Detailed information    

insolico Bioinformatically predicted

Overview

Name   degU   Type   Regulator
Locus tag   PPM30_RS16690 Genome accession   NZ_CP116868
Coordinates   3193701..3194390 (-) Length   229 a.a.
NCBI ID   WP_003219701.1    Uniprot ID   G4P1D5
Organism   Bacillus subtilis subsp. subtilis strain MGP003     
Function   activation of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 3188701..3199390
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PPM30_RS16655 flgN 3188881..3189363 (-) 483 WP_003227999.1 flagellar protein FlgN -
  PPM30_RS16660 flgM 3189379..3189645 (-) 267 WP_003227997.1 flagellar biosynthesis anti-sigma factor FlgM -
  PPM30_RS16665 yvyF 3189726..3190145 (-) 420 WP_003227995.1 TIGR03826 family flagellar region protein -
  PPM30_RS16670 comFC 3190219..3190941 (-) 723 WP_003227991.1 comF operon protein ComFC Machinery gene
  PPM30_RS16675 comFB 3190905..3191201 (-) 297 WP_003227989.1 late competence protein ComFB -
  PPM30_RS16680 comFA 3191261..3192652 (-) 1392 WP_003243962.1 ATP-dependent helicase ComFA Machinery gene
  PPM30_RS16685 fakBA 3192758..3193603 (-) 846 WP_003244125.1 DegV family protein -
  PPM30_RS16690 degU 3193701..3194390 (-) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  PPM30_RS16695 degS 3194473..3195630 (-) 1158 WP_003227983.1 two-component sensor histidine kinase DegS Regulator
  PPM30_RS16700 yvyE 3195847..3196500 (+) 654 WP_003227979.1 YigZ family protein -
  PPM30_RS16705 tagV 3196500..3197675 (+) 1176 WP_003244117.1 polyisoprenyl-teichoic acid--peptidoglycan teichoic acid transferase TagV -
  PPM30_RS16710 tagO 3197748..3198824 (-) 1077 WP_003227975.1 MraY family glycosyltransferase -

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 25866.57 Da        Isoelectric Point: 5.9446

>NTDB_id=780577 PPM30_RS16690 WP_003219701.1 3193701..3194390(-) (degU) [Bacillus subtilis subsp. subtilis strain MGP003]
MTKVNIVIIDDHQLFREGVKRILDFEPTFEVVAEGDDGDEAARIVEHYHPDVVIMDINMPNVNGVEATKQLVELYPESKV
IILSIHDDENYVTHALKTGARGYLLKEMDADTLIEAVKVVAEGGSYLHPKVTHNLVNEFRRLATSGVSAHPQHEVYPEIR
RPLHILTRRECEVLQMLADGKSNRGIGESLFISEKTVKNHVSNILQKMNVNDRTQAVVVAIKNGWVEMR

Nucleotide


Download         Length: 690 bp        

>NTDB_id=780577 PPM30_RS16690 WP_003219701.1 3193701..3194390(-) (degU) [Bacillus subtilis subsp. subtilis strain MGP003]
GTGACTAAAGTAAACATTGTTATTATCGACGACCATCAGTTATTTCGTGAAGGTGTTAAACGGATATTGGATTTTGAACC
TACCTTTGAAGTGGTAGCCGAAGGTGATGACGGGGACGAAGCGGCTCGTATTGTTGAGCACTATCATCCTGATGTTGTGA
TCATGGATATCAATATGCCAAACGTAAATGGTGTGGAAGCTACAAAACAGCTTGTAGAGCTGTATCCTGAATCTAAAGTA
ATTATTCTATCAATTCACGATGACGAAAATTATGTAACACATGCCCTGAAAACAGGTGCAAGAGGTTATCTGCTGAAAGA
GATGGATGCTGATACATTAATTGAAGCGGTTAAAGTAGTGGCTGAGGGCGGATCTTACCTCCATCCGAAGGTTACTCACA
ACCTCGTTAACGAATTCCGCCGCCTTGCAACAAGCGGAGTTTCTGCACACCCTCAACATGAGGTTTACCCTGAAATCCGC
AGACCATTACATATTTTAACTAGGCGGGAATGTGAAGTGCTGCAGATGCTTGCAGACGGAAAAAGCAACCGCGGTATTGG
TGAATCATTGTTTATCAGTGAGAAAACCGTTAAAAACCATGTCAGCAATATTTTACAAAAAATGAATGTAAACGACCGGA
CGCAAGCCGTTGTGGTCGCCATTAAAAATGGCTGGGTAGAAATGAGATAG

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(165-220)

Response regulator receiver domain (Response_reg)

(6-118)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G4P1D5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  degU Bacillus subtilis subsp. subtilis str. 168

100

100

1