Detailed information    

insolico Bioinformatically predicted

Overview

Name   recO   Type   Machinery gene
Locus tag   PPM30_RS11530 Genome accession   NZ_CP116868
Coordinates   2203131..2203898 (-) Length   255 a.a.
NCBI ID   WP_003230055.1    Uniprot ID   A0AAE2SJ05
Organism   Bacillus subtilis subsp. subtilis strain MGP003     
Function   ssDNA annealing; plasmid transformation (predicted from homology)   
DNA processing Homologous recombination

Genomic Context

Location: 2198131..2208898
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PPM30_RS11510 ppsR 2198306..2199118 (-) 813 WP_003230064.1 pyruvate, water dikinase regulatory protein -
  PPM30_RS11515 ccpN 2199144..2199782 (-) 639 WP_003237058.1 transcriptional regulator CcpN -
  PPM30_RS11520 glyS 2199915..2201954 (-) 2040 WP_003230059.1 glycine--tRNA ligase subunit beta -
  PPM30_RS11525 glyQ 2201947..2202834 (-) 888 WP_003226213.1 glycine--tRNA ligase subunit alpha -
  PPM30_RS11530 recO 2203131..2203898 (-) 768 WP_003230055.1 DNA repair protein RecO Machinery gene
  PPM30_RS11535 yqzL 2203935..2204078 (-) 144 WP_003230053.1 YqzL family protein -
  PPM30_RS11540 era 2204226..2205131 (-) 906 WP_003230051.1 GTPase Era -
  PPM30_RS11545 - 2205112..2205522 (-) 411 WP_003230049.1 cytidine deaminase -
  PPM30_RS11550 unpK 2205641..2206012 (-) 372 WP_004398824.1 diacylglycerol kinase family protein -
  PPM30_RS11555 ybeY 2205993..2206466 (-) 474 WP_003230039.1 rRNA maturation RNase YbeY -
  PPM30_RS11560 pgpH 2206467..2208602 (-) 2136 WP_010886570.1 cyclic-di-AMP phosphodiesterase PgpH -

Sequence

Protein


Download         Length: 255 a.a.        Molecular weight: 29328.02 Da        Isoelectric Point: 8.3080

>NTDB_id=780555 PPM30_RS11530 WP_003230055.1 2203131..2203898(-) (recO) [Bacillus subtilis subsp. subtilis strain MGP003]
MLTKCEGIVLRTNDYGETNKIVTLLTREHGKIGVMARGAKKPNSRLSAVSQPFLYGSFLMQKTSGLGTLQQGEMILSMRG
IREDLFLTAYAAYVAELVDRGTEEKKPNPYLFEFILESLKQLNEGTDPDVITFIVQMKMLGVMGLYPELNHCVHCKSQDG
TFHFSVRDNGFICHRCFEKDPYRIPIKPQTARLLRLFYYFDLSRLGNVSLKEETKAELKQVIDLYYEEYSGLYLKSKRFL
DQMESMKHLMGENKS

Nucleotide


Download         Length: 768 bp        

>NTDB_id=780555 PPM30_RS11530 WP_003230055.1 2203131..2203898(-) (recO) [Bacillus subtilis subsp. subtilis strain MGP003]
ATGCTGACAAAATGTGAAGGGATCGTTCTTCGCACAAATGATTACGGAGAGACGAATAAAATCGTAACATTACTGACAAG
AGAACACGGAAAAATAGGTGTTATGGCACGAGGCGCCAAAAAACCGAACAGCCGTTTATCAGCAGTCAGCCAGCCCTTTT
TGTATGGTTCTTTCTTAATGCAAAAAACATCGGGCCTCGGAACGCTTCAGCAGGGGGAAATGATCCTCAGCATGAGAGGC
ATCAGGGAAGACTTGTTTTTAACAGCATATGCTGCCTATGTTGCTGAGTTAGTCGACAGAGGCACAGAAGAAAAAAAGCC
AAATCCTTATTTATTTGAATTCATATTAGAATCATTAAAACAGTTGAATGAAGGAACAGATCCGGATGTTATCACCTTCA
TTGTTCAAATGAAGATGCTCGGTGTCATGGGCCTGTATCCTGAGCTGAATCATTGTGTACATTGTAAAAGCCAAGACGGA
ACCTTTCATTTCTCTGTTCGTGATAATGGTTTTATATGCCACCGCTGTTTTGAAAAAGATCCTTACAGGATACCGATTAA
ACCGCAAACGGCAAGGCTGTTAAGGCTCTTTTACTATTTTGATCTGTCGAGACTCGGCAATGTGTCCTTAAAAGAGGAAA
CAAAAGCTGAATTAAAGCAAGTGATTGATTTATATTACGAAGAATATTCGGGATTGTATTTAAAATCAAAGCGCTTTTTA
GATCAAATGGAAAGCATGAAACATCTTATGGGTGAAAACAAAAGTTGA

Domains

Predicted by InterproScan.

Recombination protein O C terminal (RecO_C)

(82-237)

Recombination protein O N terminal (RecO_N)

(1-75)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recO Bacillus subtilis subsp. subtilis str. 168

100

100

1