Detailed information    

insolico Bioinformatically predicted

Overview

Name   spo0A   Type   Regulator
Locus tag   PPM30_RS11000 Genome accession   NZ_CP116868
Coordinates   2112207..2113010 (-) Length   267 a.a.
NCBI ID   WP_003226427.1    Uniprot ID   -
Organism   Bacillus subtilis subsp. subtilis strain MGP003     
Function   activation and repression of comK; repression of rok; repression of abrB (predicted from homology)   
Competence regulation

Genomic Context

Location: 2107207..2118010
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PPM30_RS10975 glpQB 2108353..2109084 (-) 732 WP_003230288.1 glycerophosphodiester phosphodiesterase -
  PPM30_RS10980 yqiI 2109163..2109783 (-) 621 WP_010886565.1 N-acetylmuramoyl-L-alanine amidase family protein -
  PPM30_RS10985 yqiH 2109798..2110091 (-) 294 WP_003230284.1 lipoprotein -
  PPM30_RS10990 - 2110399..2110551 (+) 153 WP_003230276.1 hypothetical protein -
  PPM30_RS10995 yqiG 2110624..2111742 (+) 1119 WP_004398691.1 NADH-dependent flavin oxidoreductase -
  PPM30_RS11000 spo0A 2112207..2113010 (-) 804 WP_003226427.1 sporulation transcription factor Spo0A Regulator
  PPM30_RS11005 spoIVB 2113286..2114566 (-) 1281 WP_004398697.1 SpoIVB peptidase -
  PPM30_RS11010 recN 2114741..2116471 (-) 1731 WP_003230267.1 DNA repair protein RecN Machinery gene
  PPM30_RS11015 argR 2116508..2116957 (-) 450 WP_003230265.1 arginine repressor ArgR -
  PPM30_RS11020 yqxC 2117055..2117900 (-) 846 WP_003230264.1 TlyA family RNA methyltransferase -

Sequence

Protein


Download         Length: 267 a.a.        Molecular weight: 29691.19 Da        Isoelectric Point: 6.3913

>NTDB_id=780544 PPM30_RS11000 WP_003226427.1 2112207..2113010(-) (spo0A) [Bacillus subtilis subsp. subtilis strain MGP003]
MEKIKVCVADDNRELVSLLSEYIEGQEDMEVIGVAYNGQECLSLFKEKDPDVLVLDIIMPHLDGLAVLERLRESDLKKQP
NVIMLTAFGQEDVTKKAVDLGASYFILKPFDMENLVGHIRQVSGNASSVTHRAPSSQSSIIRSSQPEPKKKNLDASITSI
IHEIGVPAHIKGYLYLREAISMVYNDIELLGSITKVLYPDIAKKFNTTASRVERAIRHAIEVAWSRGNIDSISSLFGYTV
SMTKAKPTNSEFIAMVADKLRLEHKAS

Nucleotide


Download         Length: 804 bp        

>NTDB_id=780544 PPM30_RS11000 WP_003226427.1 2112207..2113010(-) (spo0A) [Bacillus subtilis subsp. subtilis strain MGP003]
GTGGAGAAAATTAAAGTTTGTGTTGCTGATGATAATCGAGAGCTGGTAAGCCTGTTAAGTGAATATATAGAAGGACAGGA
AGACATGGAAGTGATCGGCGTTGCTTATAACGGACAGGAATGCCTGTCGCTGTTTAAAGAAAAAGATCCCGATGTGCTCG
TATTAGATATTATTATGCCGCATCTAGACGGACTTGCGGTTTTAGAGAGGCTGAGGGAATCAGATCTGAAAAAACAGCCG
AATGTCATTATGCTGACAGCCTTTGGGCAGGAAGATGTCACGAAAAAGGCCGTCGATTTAGGCGCGTCCTACTTTATTCT
CAAACCGTTTGATATGGAAAACCTTGTCGGCCATATCCGCCAGGTCAGCGGAAATGCCAGCAGTGTGACGCATCGTGCGC
CATCATCGCAAAGCAGTATTATACGCAGCAGCCAGCCTGAACCAAAGAAGAAAAATCTCGACGCGAGCATCACAAGCATT
ATCCATGAAATCGGCGTCCCAGCCCATATTAAAGGCTATCTCTATCTGCGCGAAGCAATCTCAATGGTATACAATGACAT
CGAATTGCTCGGCAGCATTACAAAAGTCCTCTATCCGGACATCGCCAAAAAATTTAACACAACCGCAAGCCGTGTAGAAA
GAGCGATCCGCCATGCAATTGAAGTGGCATGGAGCAGAGGAAACATTGATTCCATTTCCTCGTTGTTTGGTTATACTGTC
AGCATGACAAAAGCTAAACCTACCAACAGTGAATTCATTGCAATGGTTGCGGATAAGCTGAGGTTAGAGCATAAGGCTTC
TTAA

Domains

Predicted by InterproScan.

Sporulation initiation factor Spo0A C terminal (Spo0A_C)

(157-260)

Response regulator receiver domain (Response_reg)

(6-119)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  spo0A Bacillus subtilis subsp. subtilis str. 168

100

100

1