Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFC   Type   Machinery gene
Locus tag   PPM66_RS16670 Genome accession   NZ_CP116867
Coordinates   3190219..3190941 (-) Length   240 a.a.
NCBI ID   WP_003227991.1    Uniprot ID   A0AAE2SKX0
Organism   Bacillus subtilis subsp. subtilis strain MGP008     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3185219..3195941
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PPM66_RS16635 fliW 3185358..3185789 (-) 432 WP_003228007.1 flagellar assembly protein FliW -
  PPM66_RS16640 yviE 3185810..3186385 (-) 576 WP_003243053.1 DUF6470 family protein -
  PPM66_RS16645 flgL 3186432..3187328 (-) 897 WP_003228004.1 flagellar hook-associated protein FlgL -
  PPM66_RS16650 flgK 3187339..3188862 (-) 1524 WP_003228001.1 flagellar hook-associated protein FlgK -
  PPM66_RS16655 flgN 3188881..3189363 (-) 483 WP_003227999.1 flagellar protein FlgN -
  PPM66_RS16660 flgM 3189379..3189645 (-) 267 WP_003227997.1 flagellar biosynthesis anti-sigma factor FlgM -
  PPM66_RS16665 yvyF 3189726..3190145 (-) 420 WP_003227995.1 TIGR03826 family flagellar region protein -
  PPM66_RS16670 comFC 3190219..3190941 (-) 723 WP_003227991.1 comF operon protein ComFC Machinery gene
  PPM66_RS16675 comFB 3190905..3191201 (-) 297 WP_003227989.1 late competence protein ComFB -
  PPM66_RS16680 comFA 3191261..3192652 (-) 1392 WP_003243962.1 ATP-dependent helicase ComFA Machinery gene
  PPM66_RS16685 fakBA 3192758..3193603 (-) 846 WP_003244125.1 DegV family protein -
  PPM66_RS16690 degU 3193701..3194390 (-) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  PPM66_RS16695 degS 3194473..3195630 (-) 1158 WP_003227983.1 two-component sensor histidine kinase DegS Regulator

Sequence

Protein


Download         Length: 240 a.a.        Molecular weight: 27477.75 Da        Isoelectric Point: 9.0021

>NTDB_id=780491 PPM66_RS16670 WP_003227991.1 3190219..3190941(-) (comFC) [Bacillus subtilis subsp. subtilis strain MGP008]
MSNEAGGGIHKLICLLCDSQFSQDVTWRALFLLKPDEKVCYSCRSKLKKITGHICPLCGRPQSVHAVCRDCEVWRTRIRD
SLLLRQNRSVYTYNDMMKETLSRFKFRGDAEIINAFKSDFSSTFSKVYPDKHFVLVPIPLSKEREEERGFNQAHLLAECL
DRPSHHPLIRLNNEKQSKKKKTERLLSECIFDTKNNSAEGMNIILIDDLYTTGATLHFAARCLLEKGKAASVSSFTLIRS

Nucleotide


Download         Length: 723 bp        

>NTDB_id=780491 PPM66_RS16670 WP_003227991.1 3190219..3190941(-) (comFC) [Bacillus subtilis subsp. subtilis strain MGP008]
ATGTCAAACGAAGCAGGAGGAGGCATTCATAAACTGATCTGTTTATTATGTGATTCGCAATTTTCTCAAGATGTTACATG
GAGAGCCCTTTTTTTACTAAAGCCTGATGAAAAGGTTTGTTATTCTTGCAGAAGCAAATTAAAGAAAATCACAGGACATA
TCTGCCCCCTGTGCGGCAGACCTCAATCTGTTCATGCCGTATGCAGGGATTGCGAGGTGTGGAGAACAAGGATCAGAGAC
AGTTTGCTATTGCGTCAAAACCGTTCAGTTTACACATATAATGATATGATGAAAGAAACGCTCTCCCGTTTTAAATTTAG
AGGAGATGCAGAAATCATAAATGCATTTAAAAGTGATTTTTCTTCAACCTTTTCTAAGGTTTACCCCGATAAGCATTTTG
TTCTTGTACCTATTCCGCTGAGCAAGGAACGGGAAGAAGAGCGCGGATTTAACCAGGCACATCTCTTGGCAGAATGTTTA
GACCGGCCTTCCCACCATCCCCTCATTCGCCTGAATAATGAGAAACAGTCAAAGAAAAAGAAAACAGAACGCCTGCTGTC
AGAGTGCATTTTTGATACAAAAAATAATTCAGCAGAAGGTATGAATATCATTTTAATAGACGATCTTTATACAACAGGCG
CCACCTTGCACTTCGCAGCCCGCTGCTTATTAGAAAAAGGAAAAGCCGCTTCAGTGTCATCTTTTACCTTGATCAGAAGC
TAA

Domains

Predicted by InterproScan.

Double zinc ribbon domain (DZR_2)

(14-71)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFC Bacillus subtilis subsp. subtilis str. 168

100

100

1