Detailed information    

insolico Bioinformatically predicted

Overview

Name   recU   Type   Machinery gene
Locus tag   PPM66_RS10015 Genome accession   NZ_CP116867
Coordinates   1934988..1935608 (+) Length   206 a.a.
NCBI ID   WP_004399067.1    Uniprot ID   -
Organism   Bacillus subtilis subsp. subtilis strain MGP008     
Function   plasmid transformation; homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1929988..1940608
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PPM66_RS09975 ptsA 1931119..1931625 (-) 507 WP_009967573.1 PTS sugar transporter subunit IIA -
  PPM66_RS09980 ypqA 1931763..1932182 (+) 420 WP_004398640.1 Hsp20/alpha crystallin family protein -
  PPM66_RS09985 sppG 1932203..1932580 (-) 378 WP_004398696.1 YppG family protein -
  PPM66_RS09990 yppF 1932768..1932956 (+) 189 WP_003230690.1 YppF family protein -
  PPM66_RS09995 yppE 1932995..1933366 (-) 372 WP_003246080.1 YppE family protein -
  PPM66_RS10000 yppD 1933412..1933657 (-) 246 WP_004398488.1 YppD family protein -
  PPM66_RS10005 sspM 1933856..1933960 (+) 105 WP_003225606.1 acid-soluble spore protein SspM -
  PPM66_RS10010 yppC 1933985..1934947 (-) 963 WP_004398707.1 DUF2515 domain-containing protein -
  PPM66_RS10015 recU 1934988..1935608 (+) 621 WP_004399067.1 Holliday junction resolvase RecU Machinery gene
  PPM66_RS10020 ponA 1935630..1938374 (+) 2745 WP_004398589.1 transglycosylase domain-containing protein -
  PPM66_RS10025 ypoC 1938450..1938944 (-) 495 WP_009967579.1 YpoC family protein -
  PPM66_RS10030 nth 1938941..1939600 (-) 660 WP_009967580.1 endonuclease III -
  PPM66_RS10035 dnaD 1939619..1940317 (-) 699 WP_004398499.1 DNA replication protein DnaD -

Sequence

Protein


Download         Length: 206 a.a.        Molecular weight: 23959.09 Da        Isoelectric Point: 9.6240

>NTDB_id=780459 PPM66_RS10015 WP_004399067.1 1934988..1935608(+) (recU) [Bacillus subtilis subsp. subtilis strain MGP008]
MIRYPNGKTFQPKHSVSSQNSQKRAPSYSNRGMTLEDDLNETNKYYLTNQIAVIHKKPTPVQIVNVHYPKRSAAVIKEAY
FKQSSTTDYNGIYKGRYIDFEAKETKNKTSFPLQNFHDHQIEHMKQVKAQDGICFVIISAFDQVYFLEADKLFYFWDRKE
KNGRKSIRKDELEETAYPISLGYAPRIDYISIIEQLYFSPSSGAKG

Nucleotide


Download         Length: 621 bp        

>NTDB_id=780459 PPM66_RS10015 WP_004399067.1 1934988..1935608(+) (recU) [Bacillus subtilis subsp. subtilis strain MGP008]
GTGATTCGGTATCCTAATGGAAAAACATTTCAGCCGAAACATTCGGTTTCATCCCAAAACAGTCAGAAAAGGGCCCCGTC
TTACAGTAATCGCGGAATGACCCTCGAAGATGACTTAAACGAAACGAATAAGTATTATCTGACAAACCAAATTGCCGTTA
TACACAAAAAGCCGACACCTGTTCAAATTGTAAATGTCCATTATCCAAAAAGAAGTGCCGCAGTGATTAAAGAAGCTTAC
TTTAAACAATCATCGACAACAGACTACAATGGGATTTACAAAGGGCGGTATATTGATTTTGAGGCGAAAGAAACGAAAAA
CAAGACCTCTTTCCCCCTGCAGAATTTTCATGACCATCAAATCGAGCATATGAAGCAGGTAAAGGCTCAAGACGGTATTT
GTTTTGTTATTATATCCGCTTTCGACCAGGTTTATTTTTTGGAAGCCGATAAGCTGTTTTATTTCTGGGACAGAAAAGAA
AAAAACGGCAGAAAATCAATTCGAAAAGATGAGTTGGAAGAAACAGCTTATCCGATTTCTCTTGGATACGCACCCAGAAT
TGATTATATTAGTATTATTGAACAGCTTTATTTTTCGCCATCATCTGGTGCGAAAGGTTGA

Domains

Predicted by InterproScan.

Recombination protein U (RecU)

(31-193)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recU Bacillus subtilis subsp. subtilis str. 168

100

100

1