Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   PPM66_RS06965 Genome accession   NZ_CP116867
Coordinates   1332464..1332742 (+) Length   92 a.a.
NCBI ID   WP_003244728.1    Uniprot ID   A0A199WGU6
Organism   Bacillus subtilis subsp. subtilis strain MGP008     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 1327464..1337742
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PPM66_RS06945 panEB 1328651..1329562 (+) 912 WP_003245639.1 ketopantoate reductase family protein -
  PPM66_RS06950 ampS 1329596..1330828 (-) 1233 WP_003232341.1 aminopeptidase -
  PPM66_RS06955 ykpC 1330938..1331072 (-) 135 WP_003238865.1 protein YkpC -
  PPM66_RS06960 mreBH 1331173..1332180 (-) 1008 WP_003245743.1 cell shape-determining protein MreBH -
  PPM66_RS06965 abrB 1332464..1332742 (+) 279 WP_003244728.1 transcriptional regulator AbhA Regulator
  PPM66_RS06970 kinC 1332932..1334218 (+) 1287 WP_003232333.1 two-component sensor histidine kinase KinC -
  PPM66_RS06975 ykqA 1334234..1335067 (+) 834 WP_003245146.1 gamma-glutamylcyclotransferase -
  PPM66_RS06980 ktrC 1335130..1335795 (+) 666 WP_003222311.1 Ktr system potassium transporter KtrC -
  PPM66_RS06985 ade 1335950..1337683 (+) 1734 WP_003245362.1 adenine deaminase -

Sequence

Protein


Download         Length: 92 a.a.        Molecular weight: 10256.07 Da        Isoelectric Point: 5.8808

>NTDB_id=780454 PPM66_RS06965 WP_003244728.1 1332464..1332742(+) (abrB) [Bacillus subtilis subsp. subtilis strain MGP008]
MKSIGVVRKVDELGRIVMPIELRRALDIAIKDSIEFFVDGDKIILKKYKPHGVCLMTGEITSENKEYGNGKITLSPEGAQ
LLLEEIQAALKE

Nucleotide


Download         Length: 279 bp        

>NTDB_id=780454 PPM66_RS06965 WP_003244728.1 1332464..1332742(+) (abrB) [Bacillus subtilis subsp. subtilis strain MGP008]
ATGAAATCAATAGGTGTTGTGAGAAAAGTAGATGAATTAGGCCGCATTGTCATGCCGATTGAGTTGAGACGGGCATTGGA
TATTGCCATAAAAGACAGCATTGAGTTTTTTGTTGACGGAGATAAAATTATCTTGAAAAAGTACAAACCTCATGGCGTTT
GTTTAATGACTGGAGAAATCACTTCAGAAAATAAAGAATACGGCAACGGTAAAATTACGCTAAGCCCTGAGGGTGCACAG
CTGCTTCTCGAAGAAATTCAAGCCGCTTTAAAAGAATAA

Domains

Predicted by InterproScan.

AbrB C-terminal domain (AbrB_C)

(53-88)

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(8-51)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A199WGU6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

58.242

98.913

0.576