Detailed information    

insolico Bioinformatically predicted

Overview

Name   rok   Type   Regulator
Locus tag   PPM66_RS06845 Genome accession   NZ_CP116867
Coordinates   1308386..1308961 (+) Length   191 a.a.
NCBI ID   WP_003232378.1    Uniprot ID   -
Organism   Bacillus subtilis subsp. subtilis strain MGP008     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 1303386..1313961
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PPM66_RS06815 dapD 1303572..1304282 (+) 711 WP_003218680.1 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-acetyltransferase -
  PPM66_RS06820 dapI 1304352..1305476 (+) 1125 WP_003232383.1 N-acetyldiaminopimelate deacetylase -
  PPM66_RS06825 ykuS 1305538..1305783 (+) 246 WP_003232382.1 YkuS family protein -
  PPM66_RS06830 mscT 1305820..1306623 (-) 804 WP_003244994.1 small-conductance mechanosensitive channel protein MscT -
  PPM66_RS06835 ahpA 1306860..1307402 (+) 543 WP_003245371.1 biofilm-specific peroxidase AhpA -
  PPM66_RS06840 ykuV 1307474..1307920 (+) 447 WP_003245810.1 thiol-disulfide oxidoreductase YkuV -
  PPM66_RS06845 rok 1308386..1308961 (+) 576 WP_003232378.1 transcriptional regulator Rok Regulator
  PPM66_RS06850 cse15 1309002..1309967 (-) 966 WP_003245018.1 spore protein Cse15 -
  PPM66_RS06855 mobA 1310104..1310703 (+) 600 WP_003232376.1 molybdenum cofactor guanylyltransferase -
  PPM66_RS06860 moeB 1310754..1311773 (+) 1020 WP_003232375.1 molybdopterin-synthase adenylyltransferase MoeB -
  PPM66_RS06865 glp 1311791..1313083 (+) 1293 WP_003232372.1 gephyrin-like molybdotransferase Glp -
  PPM66_RS06870 mobB 1313044..1313565 (+) 522 WP_003232370.1 molybdopterin-guanine dinucleotide biosynthesis protein B -

Sequence

Protein


Download         Length: 191 a.a.        Molecular weight: 21839.85 Da        Isoelectric Point: 9.8633

>NTDB_id=780453 PPM66_RS06845 WP_003232378.1 1308386..1308961(+) (rok) [Bacillus subtilis subsp. subtilis strain MGP008]
MFNEREALRLRLEQLNEAEVKVIREYQIERDKIYAKLRELDRNGSPSEIKKDFRSEKKPDSLPVLAELAAQEIRSYQPQS
QQQSVQPQLQSISSLPAGIPDGTTRRRRGTARPGSKAAKLREAAIKTLKRHNAAIKSSELQKEIEKESGLEIPNMTTFMQ
SLIKMYPEVKKPYRGQYILEGEIESAESANE

Nucleotide


Download         Length: 576 bp        

>NTDB_id=780453 PPM66_RS06845 WP_003232378.1 1308386..1308961(+) (rok) [Bacillus subtilis subsp. subtilis strain MGP008]
ATGTTTAATGAAAGAGAAGCTTTGCGCTTGCGGTTAGAACAATTAAATGAAGCTGAAGTGAAAGTCATTCGTGAATATCA
AATTGAACGTGATAAAATATACGCAAAATTAAGAGAGCTGGACAGAAATGGAAGCCCTTCCGAAATCAAAAAGGATTTCC
GTTCTGAAAAAAAACCTGACTCTCTGCCGGTTCTCGCTGAGCTTGCGGCTCAGGAAATCAGAAGCTATCAGCCGCAATCA
CAGCAGCAGTCTGTTCAGCCTCAGCTTCAATCTATTTCCTCTCTTCCTGCCGGTATACCAGACGGAACAACACGAAGAAG
AAGAGGAACGGCAAGACCGGGATCAAAAGCAGCTAAGCTGCGTGAAGCTGCTATTAAAACATTAAAACGCCACAACGCGG
CGATTAAGAGCTCGGAGCTTCAAAAAGAGATTGAAAAAGAAAGCGGTCTTGAAATCCCTAATATGACAACGTTTATGCAA
AGCTTAATTAAAATGTACCCGGAAGTGAAAAAGCCATATCGCGGGCAGTACATTTTAGAGGGTGAAATCGAATCTGCAGA
ATCAGCAAACGAATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rok Bacillus subtilis subsp. subtilis str. 168

100

100

1