Detailed information    

insolico Bioinformatically predicted

Overview

Name   kre   Type   Regulator
Locus tag   PPM66_RS06730 Genome accession   NZ_CP116867
Coordinates   1289159..1289623 (-) Length   154 a.a.
NCBI ID   WP_003232406.1    Uniprot ID   G4NVM0
Organism   Bacillus subtilis subsp. subtilis strain MGP008     
Function   regulation of regulators (predicted from homology)   
Competence regulation

Genomic Context

Location: 1284159..1294623
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PPM66_RS06710 kinA 1284625..1286445 (+) 1821 WP_003245779.1 sporulation histidine kinase KinA -
  PPM66_RS06715 dapX 1286456..1287637 (-) 1182 WP_003232415.1 aminotransferase A -
  PPM66_RS06720 - 1287839..1288000 (-) 162 WP_003245246.1 hypothetical protein -
  PPM66_RS06725 cheV 1288204..1289115 (+) 912 WP_009967126.1 chemotaxis protein CheV -
  PPM66_RS06730 kre 1289159..1289623 (-) 465 WP_003232406.1 YkyB family protein Regulator
  PPM66_RS06735 ykuC 1289749..1291041 (-) 1293 WP_003245267.1 MFS transporter -
  PPM66_RS06740 ltdD 1291117..1291611 (-) 495 WP_010886500.1 L,D-transpeptidase family protein -
  PPM66_RS06745 ppeE 1291668..1292528 (-) 861 WP_003232400.1 metallophosphoesterase -
  PPM66_RS06750 fadH 1292671..1293435 (+) 765 WP_003232398.1 2,4-dienoyl-CoA reductase -

Sequence

Protein


Download         Length: 154 a.a.        Molecular weight: 17895.71 Da        Isoelectric Point: 10.3545

>NTDB_id=780452 PPM66_RS06730 WP_003232406.1 1289159..1289623(-) (kre) [Bacillus subtilis subsp. subtilis strain MGP008]
MDDHAYTKDLQPTVENLSKAVYTVNRHAKTAPNPKYLYLLKKRALQKLVKEGKGKKIGLHFSKNPRFSQQQSDVLISIGD
YYFHMPPTKEDFEHLPHLGTLNQSYRNPKAQMSLTKAKHLLQEYVGMKEKPLVPNRQQPAYHKPVFKKLGESYF

Nucleotide


Download         Length: 465 bp        

>NTDB_id=780452 PPM66_RS06730 WP_003232406.1 1289159..1289623(-) (kre) [Bacillus subtilis subsp. subtilis strain MGP008]
ATGGACGACCATGCATATACGAAAGATCTGCAGCCAACCGTAGAAAATCTTTCAAAAGCAGTTTACACTGTGAACCGCCA
TGCAAAAACCGCCCCCAACCCTAAATACCTATATCTGCTGAAAAAACGGGCTTTGCAAAAGCTTGTCAAAGAAGGTAAAG
GAAAGAAAATAGGGCTTCATTTTTCAAAAAATCCAAGGTTCAGCCAACAGCAATCGGACGTGCTTATCTCAATCGGAGAC
TACTATTTTCACATGCCTCCAACTAAAGAAGACTTCGAACATCTTCCGCATTTAGGTACACTTAATCAATCGTATCGAAA
TCCTAAAGCTCAAATGTCTTTAACAAAAGCGAAACACCTATTGCAAGAATATGTCGGCATGAAAGAAAAGCCGCTAGTGC
CAAATCGCCAGCAGCCAGCTTACCATAAACCGGTCTTTAAAAAACTTGGCGAGAGTTACTTTTAA

Domains

Predicted by InterproScan.

YkyB-like protein (YkyB)

(14-128)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G4NVM0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  kre Bacillus subtilis subsp. subtilis str. 168

100

100

1