Detailed information    

insolico Bioinformatically predicted

Overview

Name   irvR   Type   Regulator
Locus tag   QYT29_RS14380 Genome accession   NZ_CP129560
Coordinates   2885034..2885747 (-) Length   237 a.a.
NCBI ID   WP_001031454.1    Uniprot ID   A0A0H2XG68
Organism   Staphylococcus aureus strain 727M     
Function   regulate expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 2880034..2890747
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QYT29_RS14355 (QYT29_14330) - 2881447..2882652 (-) 1206 WP_031886769.1 tyrosine-type recombinase/integrase -
  QYT29_RS14360 (QYT29_14335) - 2882778..2883392 (+) 615 WP_000191464.1 hypothetical protein -
  QYT29_RS14365 (QYT29_14340) - 2883389..2883535 (-) 147 WP_001795334.1 hypothetical protein -
  QYT29_RS14370 (QYT29_14345) - 2883739..2884080 (-) 342 WP_000591749.1 hypothetical protein -
  QYT29_RS14375 (QYT29_14350) - 2884086..2885018 (-) 933 WP_000759682.1 exonuclease domain-containing protein -
  QYT29_RS14380 (QYT29_14355) irvR 2885034..2885747 (-) 714 WP_001031454.1 XRE family transcriptional regulator Regulator
  QYT29_RS14385 (QYT29_14360) - 2885710..2885883 (+) 174 WP_001801500.1 hypothetical protein -
  QYT29_RS14390 (QYT29_14365) - 2885880..2886143 (+) 264 WP_000854072.1 helix-turn-helix transcriptional regulator -
  QYT29_RS14395 (QYT29_14370) - 2886159..2886302 (+) 144 WP_000939498.1 hypothetical protein -
  QYT29_RS14400 (QYT29_14375) - 2886292..2886501 (-) 210 WP_000642492.1 hypothetical protein -
  QYT29_RS14405 (QYT29_14380) - 2886557..2886802 (+) 246 WP_001025401.1 DUF2829 domain-containing protein -
  QYT29_RS14410 (QYT29_14385) - 2886771..2887136 (-) 366 WP_001128433.1 hypothetical protein -
  QYT29_RS14415 (QYT29_14390) - 2887191..2887406 (+) 216 WP_001097552.1 hypothetical protein -
  QYT29_RS14420 (QYT29_14395) - 2887431..2887694 (+) 264 WP_016187436.1 helix-turn-helix domain-containing protein -
  QYT29_RS14425 (QYT29_14400) - 2887707..2887868 (+) 162 WP_001285948.1 DUF1270 domain-containing protein -
  QYT29_RS14430 (QYT29_14405) - 2887947..2888270 (+) 324 WP_000174994.1 hypothetical protein -
  QYT29_RS14435 (QYT29_14410) - 2888285..2888647 (+) 363 WP_000985976.1 hypothetical protein -
  QYT29_RS14440 (QYT29_14415) - 2888644..2889810 (+) 1167 WP_031794951.1 DUF2800 domain-containing protein -
  QYT29_RS14445 (QYT29_14420) - 2889837..2890391 (+) 555 WP_000647288.1 DUF2815 family protein -

Sequence

Protein


Download         Length: 237 a.a.        Molecular weight: 27017.58 Da        Isoelectric Point: 5.0545

>NTDB_id=780448 QYT29_RS14380 WP_001031454.1 2885034..2885747(-) (irvR) [Staphylococcus aureus strain 727M]
MNKERNIIIAKNIRKFLNDSNMSQKKLAELINIKPSTLSDYLNLRSNPSHGVIQRIADVFEVGKSDIDTTYKDDNDITSI
YNKLTPPRQENVLNYANEQLEEQNSKGDNVVDINSYKQEKTPVNVNGCVSAGVGERLHDETLFTEMVKGPIPTHDLALKV
NGDSMEPMFKDGEIIFVEKTHNIKNGQIGIFIIEEEAYVKKVFVEDDRLTLVSLNKDYDDLHFYRNESVRLIGKVIL

Nucleotide


Download         Length: 714 bp        

>NTDB_id=780448 QYT29_RS14380 WP_001031454.1 2885034..2885747(-) (irvR) [Staphylococcus aureus strain 727M]
ATGAACAAAGAAAGAAATATTATTATAGCCAAAAACATTAGAAAATTTCTCAACGATTCAAATATGTCTCAAAAGAAACT
TGCTGAACTCATTAACATAAAACCATCTACTTTAAGCGATTATTTAAATTTACGTTCCAACCCCTCTCACGGCGTTATAC
AAAGGATAGCTGATGTTTTCGAGGTTGGTAAAAGCGACATAGATACTACATACAAAGACGATAACGACATCACTTCCATA
TACAACAAACTCACACCTCCCCGCCAAGAAAACGTACTTAACTATGCAAATGAACAATTGGAAGAACAGAATTCTAAAGG
AGATAACGTTGTAGATATTAATTCATATAAACAGGAGAAAACTCCAGTTAACGTCAATGGTTGCGTCTCTGCTGGTGTAG
GAGAACGTTTACACGATGAAACGCTATTTACTGAAATGGTTAAAGGACCTATCCCCACACACGATTTAGCGTTAAAAGTA
AATGGTGATTCTATGGAACCTATGTTTAAAGATGGCGAAATCATATTTGTGGAGAAAACTCACAATATAAAGAATGGACA
AATTGGTATATTCATCATTGAAGAAGAAGCGTACGTTAAGAAAGTCTTTGTTGAAGATGATAGATTGACTCTAGTTTCAC
TAAATAAAGATTACGACGATCTACACTTTTATAGAAATGAAAGTGTGAGGTTAATTGGAAAAGTTATTTTATAA

Domains

Predicted by InterProScan.

Peptidase S24-like (Peptidase_S24)

(127-236)

Helix-turn-helix (HTH_3)

(13-63)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0H2XG68

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  irvR Streptococcus mutans UA159

33.929

100

0.401